RetrogeneDB ID:
retro_ecab_1003
Organism:
Horse ( Equus_caballus )
Location:
8:86343130-86343561 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.67 %
Coverage:
83.05 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1003
ATAAATGATTCAGGTGGGAGAGAACCAAGATTTTTAAAAAATGGAGAAATTCGAGGAGAA
ATATCCAATTCAATGAGGAAAAGCAACATAAGGATAATGGGTATCCCAGAAGGAGAAGAG
AGGGAAAAAGACCAGAGAGTTTATTTCAAGAAATAATAGCTGAAAACTTCCAAACATGAA
GAAAGAACTTAGTATAGGAGTATATGAAGCTAACAGAACACCTAACTATCTCAATGCAAA
AAGACCTTTTCCAAGGCACATTATATTAAAAATATCAAAAGTTAATGACAAAGAAAAAAT
ATTAAAGAGAGAAGAAAATAACTTACAAAGGAACCCCCATCAGGATATCAGCAGATTTCT
CAGCAGAAACTCTCCATACTATGAGACAGTGGAATGGTATACTCAAAATATTGAAAGATA
AAAACTGTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDT-ESLFKEIIAENF-PNLGKKLDLQVHEANRTPNYIKAKRPSPRHIVLKLVKVNDK
I......E.R..K......E.....RKSNIRI.GIPEGEE..KD..ESLF.EIIAENF.PN..K.L...V.EANRTPNY..AKRP.PRHI.LK..KVNDK
Retrocopy
INDSGGREPRFLKNGEIRGEISNSMRKSNIRIMGIPEGEEREKDQ/ESLFQEIIAENF/PNMKKELSIGVYEANRTPNYLNAKRPFPRHIILKISKVNDK


Parental protein
EKILRAERQKKINYKRTP-IRLSADFSAETLHTKKEWNDTFETLRDKNFQ
EKIL..E.....N..R.P.IR.SADFSAETLHT...WN.....L.DKN.Q
Retrocopy
EKILKREEN---NLQRNP\IRISADFSAETLHTMRQWNGILKILKDKNCQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide