RetrogeneDB ID:
retro_ecab_1005
Organism:
Horse ( Equus_caballus )
Location:
9:9798820-9799174 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.64 %
Coverage:
60.82 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
TESC
Parental gene aliases:
No gene alias available
Parental gene description:
tescalcin [Source:HGNC Symbol;Acc:26065]

Genomic region (view in browser)





>retro_ecab_1005
CAGCCCATGAACCCCACTGTGAAGGAGGAGCAGGTGCAGCTGTGCCTGAAGGAGAAGCTG
AGATTTCTGCTCCACATGTATGACTCAGACGGCGATGGAGCTATCACTCTAGAAGAATAC
AGAAATGTGGTCGAGGAGCTGCTCTTGGGAAACCCCGACATGGACAAGGATTCCAGTGGC
TTCATTGCAGATGAGGCCATGATGGAGGCAGCCAGCATCCGGATGAGGCAGATGAAGTCT
GATCAGGTGTAAGAGAGCATCACCTTTGACGACTTCCTGAAGGTCTGCCATGGGAGAGAC
ATCAAGACCAAGATGCACGTCTGCTTCCTTTACATGGAAACCATCGCCCTTTGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RPIDITMDEEQVQLCRKEKLRFLFHMYDSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCVGQMEPDQVYEGITFDDFLKIWQGID
.P...T..EEQVQLC.KEKLRFL.HMYDSD.DG.ITLEEYRNVVEELL.GNP...K.S...IAD.AMMEAAS....QM..DQV.E.ITFDDFLK...G.D
Retrocopy
QPMNPTVKEEQVQLCLKEKLRFLLHMYDSDGDGAITLEEYRNVVEELLLGNPDMDKDSSGFIADEAMMEAASIRMRQMKSDQV*ESITFDDFLKVCHGRD


Parental protein
IETKMHVRFLNVEAMALC
I.TKMHV.FL..E..ALC
Retrocopy
IKTKMHVCFLYMETIALC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide