RetrogeneDB ID:
retro_ecab_1006
Organism:
Horse ( Equus_caballus )
Location:
9:30092624-30093623 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.6 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_1006
ATGGTGAAGGTCGGAGTAAATGGATTTGGCCGTATTAGGCGCCTGGTCACCAGGGCTGCT
TTTAACTCTGGCAAAGTGGATATTGTCGCCATCAATGACCCCTTCATTGACCTCAACTAC
ATGGTCTACATGTTTCAGTATGATTTCACCCATGGCAAGTTCCATGGCACAGTCAAGGCC
GAGCACGGGAAGCTTGTCATCAACGGAAAGGCCATCACCATCTTCCAGGAGCGAGATCCC
GCCAACATCAAATGGGGCGATGCTGGTGCTGAATATGTTGTGGAGTCCACTGGTGTCTTC
ACTGCCTTGGAGAAGGCTGGGGCTCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCT
GCCCCTTCTGCTGATGCCCCAATGTTTGTGATGGGCGTGAACCACGAGAAGTATGACAAT
TCCCTGAAGATTGTCAGCAATGCCTCCTGCACCACCAGTTGCTTGGCCCCCCTGGCCAAG
GTCATCCATGACCACTTTGGCATCGTGGAGGGACTCATGACTGCAGTGCATGCCATCACT
GCCACCCAGAAGACCGTGGATGGCCCCTCTGGGAAGCTGTGGCGCGATGGCCGAGGGGCT
GCCCAGAACATCATCCCTGCTTCTACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCT
GAACTGAATGGGAAGCTCACTGGCATGGCCTCCCGTGTCCCCACGCCTAATGTGTCAGTC
GTGGATCTGACCTGCCGCCTGGAGAAAGCTGCCAAATACGATGAGATCAAGAAGGTGGTG
AAGCAAGCATCAGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGTC
TCCTGCGATTTTAACAGTGACACCCACTCTTCCACCTTCGATGCTGGGGCTGGCATTGCC
CTCAATGACCACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAAT
AAGGTGGTGGACCTTATGGCCCACATGGCCTCCAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.25
SRP021940_embryo 0.17
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.13
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF
MVKVGVNGFGRI.RLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYD.THGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF
Retrocopy
MVKVGVNGFGRIRRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDFTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF


Parental protein
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGA
T.LEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTT.CLAPLAKVIHDHFGIVEGLMT.VHAITATQKTVDGPSGK.WRDGRGA
Retrocopy
TALEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTSCLAPLAKVIHDHFGIVEGLMTAVHAITATQKTVDGPSGKLWRDGRGA


Parental protein
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
AQNIIPASTGAAKAVGKVIPELNGKLTGMA.RVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Retrocopy
AQNIIPASTGAAKAVGKVIPELNGKLTGMASRVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA


Parental protein
LNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
LNDHFVKLISWYDNEFGYSN.VVDLMAHMASKE
Retrocopy
LNDHFVKLISWYDNEFGYSNKVVDLMAHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide