RetrogeneDB ID:
retro_ecab_1007
Organism:
Horse ( Equus_caballus )
Location:
9:36381708-36381945 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.68 %
Coverage:
76.7 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
PDCD5
Parental gene aliases:
No gene alias available
Parental gene description:
programmed cell death 5 [Source:HGNC Symbol;Acc:8764]

Genomic region (view in browser)





>retro_ecab_1007
ATAGTCTCCATCAGTTAGAGGTTTATTTTGAGTAACTTAGTACTTGTAAAGTCTGAGAAA
ACTAAATAAGTAGAGAATTACCTTACACAGATGGCAAGATATAAACAATTAAGTGGGAAG
GTATCAGAACAAGGTTTAATAGAAATCCTTAAAAAGATAAGCCAACAAACAGAAAATAAA
GCAACAGCTAAATTCAACTGAAGAAAAATAATGGACTCTGATGAAGATGACAATTAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDEDDDY
....S.R..LSNL.LVK.EKTK.VENYL.QMARY.QLSGKVSEQGLIEIL.K.SQQTE.K.T.KFN.RK.MDSDEDD.Y
Retrocopy
IVSIS*RFILSNLVLVKSEKTK*VENYLTQMARYKQLSGKVSEQGLIEILKKISQQTENKATAKFN*RKIMDSDEDDNY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide