RetrogeneDB ID:
retro_ecab_1009
Organism:
Horse ( Equus_caballus )
Location:
9:44871940-44872277 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.28 %
Coverage:
59.38 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
SEC11C
Parental gene aliases:
No gene alias available
Parental gene description:
SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]

Genomic region (view in browser)





>retro_ecab_1009
CTGTTCCTAGCAAATTCTGGGGACAACCTTTTAGAGCTGGTGAAATAGTTGTTTTTAAAG
TTGAAGGATGAGACATTCCAGTAGTTCACAGAGTAATCAAAGTTTATGAAAAAGATAATG
GAGACAAAAAATTTCTGACTAAGGGAGATAATAATAAAGCTGACGAAAGAGGCTAGTACA
AAGAAGTCCAGAACTGGCTCAAAAAGGATAGGTGGGAAGAGCCAGAGGGTTTTTACCATA
TGCTGCTATGGTCACGATGATAATGAATGACTACCCAAAATTCAATTATGGTCTTTTGGC
TGTAATGGATGCATATGTGTTACTAAAATGTAAATCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFLTN-FREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGF-LPYVGMVTIIMNDYPKFKY
LFL.N.F...P.RAGEIVVFKVEG.DIP.VHRVIKV.EKDNGD.KFLTKGDNN..D.RG.YKE.QNWL.KKD......GF.LPY..MVT.IMNDYPKF.Y
Retrocopy
LFLAN/FWGQPFRAGEIVVFKVEG*DIPVVHRVIKVYEKDNGDKKFLTKGDNNKADERG*YKEVQNWL-KKDRWEEPEGF/LPYAAMVTMIMNDYPKFNY


Parental protein
ALLAVMGAYVLLKRES
.LLAVM.AYVLLK..S
Retrocopy
GLLAVMDAYVLLKCKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide