RetrogeneDB ID:
retro_ecab_1011
Organism:
Horse ( Equus_caballus )
Location:
9:50943517-50943967 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.48 %
Coverage:
75.88 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1011
AGGGAGAAAGGAGCAGACAGTTTGTTTGAATGAATAACAGCTAAGAATTTCACAAAGCTA
GGGAAAGAACTGGATTACAAGTATATGAAGTCAATAGAACTCCTAATTACATCAATGCAA
AAAGACCTTTGCCAAGGCATATAGTAGTAAAACTGGCAAAAGTCAACAACAAAGATAAAG
TATTAAAGGCAGCAAGGCAGAAGAGACTAATCTACAAAGGAATGCCTATCTAGCTTTCAG
TGGAATTCTCAGCAGAAACTACAGGCTAAGAGAGATTGGAATGTTATATTCAACATACTG
AAAGACAAAAACTTTCAGCCAAGAATACTCTATCCAGCAAAACTATGCTTTAAATATGAT
GGAGAAATAAAAGCTCTCCCAGATAAACAAAAGCTGAGGGAGTTCATTGCCACTAGACCT
CCCTTATGAGCAATGAGAAAGGATGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQNRRESLFKEIITENFLNLGKGLE-IQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDII
R.....SLF..I...NF..LGK.L...QV.E.NRTPNYIN..RP.PRHI.VKLAK...K......AARQK...YKG.PI.LS..FS.Q..Q..R.WN.I.
Retrocopy
REKGADSLFE*ITAKNFTKLGKELD/LQVYEVNRTPNYINAKRPLPRHIVVKLAKVNNKDKVL-KAARQKRLIYKGMPI*LSVEFS\QKLQAKRDWNVIF


Parental protein
KILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
.ILK.KN..PRILYP.KL.F.Y..EIKA..DKQKLREFI.TRPPL..M.K.AL
Retrocopy
NILKDKNFQPRILYPAKLCFKYDGEIKALPDKQKLREFIATRPPL*AMRKDAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide