RetrogeneDB ID:
retro_ecab_1012
Organism:
Horse ( Equus_caballus )
Location:
9:58371946-58372340 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.94 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1012
ATGGCCATGGAAGACATCACTGCTGGAGGTCCAGTGGATGTTAATACCGCTTTGTAAGAG
GTTCTGAAGACTGCCCTCATCCATGGTGGCCTAGCACGTAGAATTCACCAAGCTGCCCAA
ACCTTAGACAACTGCCAAACCCATCTCTCTGTGCTTGCATCCAACTGTGATGATCGTATG
TATGTTAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAAATCAACCTTAATTAAGGTTAA
TGATGAGAAACTACAGGGAGTGGTAGGCCTCTGTAAAATTGACAGAGAGGGAAAACCCCA
GAAAGTGATTAGTTGCAGTTGTGTGGTGGTTAAGGACTATGGCAAAGAGTCTCAGGCCAA
AGACATCATCAAGGAGTACTTCAAACGCCAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINL-IKVDDNKKLGEWVGLCKIDREGK
MA.E.I.AGG..DVNTAL.EVLKTALIH.GLAR.I..AA..LD..Q.HL.VLASNCD..MYVKLVEALCAEHQINL.IKV.D.K..G..VGLCKIDREGK
Retrocopy
MAMEDITAGGPVDVNTAL*EVLKTALIHGGLARRIHQAAQTLDNCQTHLSVLASNCDDRMYVKLVEALCAEHQINL\IKVNDEKLQGV-VGLCKIDREGK


Parental protein
PRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
P.KV..CSCVVVKDYGKESQAKD.I.EYFK..K
Retrocopy
PQKVISCSCVVVKDYGKESQAKDIIKEYFKRQK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide