RetrogeneDB ID:
retro_ecab_1013
Organism:
Horse ( Equus_caballus )
Location:
9:63065600-63066380 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
63.77 %
Coverage:
92.88 %
Frameshifts:
3
Stop codons:
5
Parental gene:
Parental gene symbol:
LIX1
Parental gene aliases:
No gene alias available
Parental gene description:
Lix1 homolog (chicken) [Source:HGNC Symbol;Acc:18581]
Genomic region (view in browser)
>retro_ecab_1013
AGAGACCTGGGGCTCAGTTCCAAAGACTTGAATGGTGTGTCTGTGTTAACAGGAACTTTG
GGAAAGCAAGCAGCAGCAAAGGGCTGCTTTCCCAAGTGGAGCCATGGTGGTCTACAAGTC
CACGCCATCTCTTGGGCCTCCCTCTGTGAGTGATGTGACCTTCCAGGGGGGACAGTATTT
TGGCAACTTTCAGTGCTGCTTCACTAGAGCTGAGGCATGACAGGATACAGCTAAAGTGGT
CTGGGTCAACTCCTTTTTCAATAAGCTGCCCTCTCCAAGGATCACCAAGGAATTCATCAA
AGGAAGTGTTCAGGAAGCAATTGCCTATGCCAGCAACACTCTAGACTTGCTTATGACCCC
AGCATCAGCATCAGAGCCCATCATGTTCGAGTCAAATATAGGGAAGACCATATTTGGAAT
TCCAGGAGCCAATGACCATTTTCCAACTATCGCACTGGAAGGGAAGCCTTAAAAGCCCTT
CGTGAAACAAAGTGTTCCCAACAGAAAATCTTCTCCCACTATTTCCAGTATGCCCTAGAT
GAAAAGATGCGCAGCTGTGTGGCCCTGGACTGGATTATAAAGGAGTAAGAGTTACCAGGA
ATGCTCTCTGAAGAGCAATGAGTGGTCTTGAGGGAGTTAGAGCAAGCCAGGAAAGCAGGA
TAACCATACTGCTACATAGAAAATAAAGAAATTTGGAGCTTAGCCTTGACTTAGATCCAC
AGTGGGCTTGACACTTCCTCGCCCAGTGATGATCTGCTGAGCCACACGACTCTGTGCGGC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.64 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.22 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 2.42 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
