RetrogeneDB ID:
retro_ecab_1014
Organism:
Horse ( Equus_caballus )
Location:
9:63528141-63528526 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
86.05 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
UBA52
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382]

Genomic region (view in browser)





>retro_ecab_1014
ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT
GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG
CAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAT
ATCCAGAGAGACTCCACCCTGCACTTGGTGCTCCGCCCTGCAGGGCAGCATCCTTGAGCC
TTCCCTCTGCCAGCTCGCCCAGAAATACAACTGCGACGAGATGATTTGCTGCAAGTGTTA
CGCTCGCCCGCACCCTCGTGCTGTCAACTGCCCCAAGAAGCAGTGCGGCCACGCCAATAA
CACGTGCCCCAAGAGGAAGGTCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.1
SRP021940_embryo 0.67
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.31
SRP021940_testis 0.36

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-LRGGIIEPSLRQLAQKYNCDKMICRKC
MQIFVKTLTGKTITLEVE.SDTIENVKAKIQDKEGIPPDQQ.LIFAGKQLEDGRTLSDYNIQ..STLHLVLR.L.G.I.EPSL.QLAQKYNCD.MIC.KC
Retrocopy
MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQCLIFAGKQLEDGRTLSDYNIQRDSTLHLVLR\LQGSILEPSLCQLAQKYNCDEMICCKC


Parental protein
YARLHPRAVNCRKKKCGHTNNLRPKKKVK
YAR.HPRAVNC.KK.CGH.NN..PK.KVK
Retrocopy
YARPHPRAVNCPKKQCGHANNTCPKRKVK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide