RetrogeneDB ID:
retro_ecab_1016
Organism:
Horse ( Equus_caballus )
Location:
9:67400866-67401376 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
81.76 %
Coverage:
57.82 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
NPM1
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]

Genomic region (view in browser)





>retro_ecab_1016
GACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTGAGTTGTGAACTAAATGCT
GACAAAGATTATCACTCTAAGGTGGAAAATGCTGAAAATGAACACTAGTTATCTTTAAGA
ATGGTCAGTTTAGGGGCTGATGCAAAGGATGAATTGCACATTGTTGAAGCAGAGGCAATG
ACTTATGAAGGCAGTCCAATTAAAGTAATACTGGCAACTTTGAAAATGTCTGTACAGCCA
ACAGTTTCCCTTGGGGGCTTTGAAATAACACCACCTGTGATCTTACAATTGAAGTGTGGT
TCAGGGCCTGTGCAAATTAGTGGATGGCACTTAGTAGCTGTGGAAGAAGATGCAGAATCA
GGTGATGAAGAGGAGAAGGATGTGAAACTCTTTAGTATATCTGGAATGCCTTCTGCCCCT
GGAAGTGGTAGCAAGGTTCGACAGAAAAAAGTAAAAACTTGCCCAGATGAAGATGATGAT
GATGATTTTGATGAGGCGGAAGCTGAAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.26
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCG
DMDMSPLRPQNYL..CEL.ADKDYH.KV.N.ENEH.LSLR.VSLGA.AKDELHIVEAEAM.YEGSPIKV.LATLKMSVQPTVSLGGFEITPPV.L.LKCG
Retrocopy
DMDMSPLRPQNYLLSCELNADKDYHSKVENAENEH*LSLRMVSLGADAKDELHIVEAEAMTYEGSPIKVILATLKMSVQPTVSLGGFEITPPVILQLKCG


Parental protein
SGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGSGSKVPQKKVKLAADEDDDDEDDDEDDDE
SGPV.ISG.HLVAVEEDAES.DEEE.DVKL.SISG..SAPGSGSKV.QKKVK...DEDDDD..D.....E
Retrocopy
SGPVQISGWHLVAVEEDAESGDEEEKDVKLFSISGMPSAPGSGSKVRQKKVKTCPDEDDDDDFDEAEAEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide