RetrogeneDB ID:
retro_ecab_1017
Organism:
Horse ( Equus_caballus )
Location:
9:67670408-67671995 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
98.49 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
KPNA2
Parental gene aliases:
No gene alias available
Parental gene description:
karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395]
Genomic region (view in browser)
>retro_ecab_1017
ATGTCCTCCAACGAGAATGCTAATTCCCCGGCTGCCCGCCTTAACAGATTCAAGAACAAG
GGGAAAGACAGCACAGAAATGAGGCGGCGCCGAATAGAAGTTAATGTGGAGCTGAGGAAA
GCTAAGAAAGATGACCAGATGCTGAAAAGGAGAAATGTAAGCTCCTTTCCTGATGATGCT
ACTTCTCCGCTACAGGAAAACTGCAACAACCAGGGCACTGTAAATTGGTCTGTTGAGGAT
ATTGTCAAAGGCGTAAACAGCAACAATTTGGAAAGCCAGCTCCAAGCTACTCAAGCTGCT
AGGAAACTGCTTTCTAGAGAAAAACAGCCCCCCATAGACAACATAATCCGGGCTGGTTTG
ATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTGTAGTCCCATTCAGTTTGAGTCT
ACTTGGGCCCTCACTAACATCGCTTCCGGGACATCAGAACAGACCAAGGCTGTGGTAGAG
GGAGGTGCTATCCCAGCATTCATTTCTCTGTTGGCATCTCCCCACGCCCACATCAGTGAA
CAAGCCGTATGGGCTCTAGGAAACATTGCAGGTGATGGTTCGGTTTTCCGAGACTTGGTG
ATCAAGTATGGTGCAGTTGACCCGCTGTTGGCTCTTCTTGCAGTTCCCGATATGTCATCT
TTGGCATGTGGTTACTTACGTAATCTTACCTGGACACTTTCAAACCTTTGTCGCAACAAG
AATCCTGCACCCCCATTAGATGCTGTTGAGCAAATTCTTCCCACTTTAGTTCGTCTCCTG
CATCATGATGATCCAGAAGTATTAGCAGATACCTGTTGGGCCATTTCCTACCTTACCGAT
GGTCCGAATGAACGGATTGAAATGGTCGTGAAAACAGGATTGGTACCCCAACTTGTAAAG
CTTCTAGGATCTACTGAATTGCCAATTGTGACTCCTGCACTAAGAGCCATAGGAAATATT
GTCACTGGGACAGACGAACAGACTCAGGTTGTAATAGATGCAGGAGCACTTGCCATCTTT
CCCAGCCTGCTAACGAACCCCAAAACTAACATTCAGAAGGAAGCTACGTGGACAATGTCA
AACATCACAGCTGGCCGCCAGGACCAGATACAGCAAGTTGTGAATCATGGATTAGTCCCA
TTCCTCATTGGTGTTCTCTCTAAGGCAGACTTTAAGACACAAAAGGAAGCTGTATGGGCT
GTGACCAACTATACAAGTGGTAGAACAGTTGAACAGATTGTATACCTTGTTCATTGTGGC
ATAATAGAACCGTTGATGAACCTCTTAACTGCAAAAGACACCAAAATTATTCTGGTTATT
CTGGATGCCATTTCAAATATCTTTCAGGCTGCTGAGAAACTAGGTGAAACTGAGAAACTT
AGTATAATGATTGAAGAATGTGGAGGTCTGGACAAAATTGAAGCTCTACAAAACCATGAA
AATGAGTCTGTGTACAAAGCTTTGTTAAACTTGATTGAGAAGTATTTCTCTGTAGAGGAA
GAGGAAGATGAAAATGTTGTGCCAGAAACTACCTCTGAAGGCTATACATTCCAAGTTCAG
GATGGCCCTCCGGGGACCTTTAACTTT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.65 |
| SRP021940_embryo | 2.3 |
| SRP021940_placental_villous | 0.22 |
| SRP021940_synovial_membrane | 0.21 |
| SRP021940_testis | 4.87 |
Parental protein coverage
Changes in the retrocopy sequence
