RetrogeneDB ID:
retro_ecab_1018
Organism:
Horse ( Equus_caballus )
Location:
9:76393364-76393965 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.68 %
Coverage:
96.1 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1018
CAATCAGAAGTGTTGGAAAGGATGAACACAATGAATGAGATAAAGAAAAATCTGCAGTCC
TTAAAAAACAGAGCTGATATTATGGAGGACGGAATTAGAAATTTAGATGAAGGACTTATA
GAAATACTTCAGATGACGAAGGAGAGAGAACTAAGACTAAAAAGAAATGAAGAAATTCTC
CAAGAAGAATCTGACTAAATTAGGAAATGCAACATAAGGATTATAGGTATTCCAGAAGGA
GAAGAGAGGGAGAAAACAGCTGAGAGCTTGTTCAAAGAAATAATAGCTGAGAACTTCCCA
AACCTGGAGAATAAGCTAGAATTACATGTAAATGAAACTATTAGAACTCCTAATTACATA
AAAGTGAAAAGACCTTCCCCCAAGGCATATATTAGTAAAACTAGCAAAAGTCAATGACAA
AGAAAAACTATTAAGGGTAACAAGGCAGAATATAGGGCAACAAAAGAAAATAACCTACAA
AGGACCCTCTATCAGGCTTTCAGCAGATTTCTAAGCAGAATCCTGACAGGCTAGGAAAGA
GTTGAATGATACATTCAAAATTCTGAAACACAACAATTTTCAGCCAAGATTATTCTATCC
A

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QSKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEERELRLKRNEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESLFKEIIAGNFP
QS..LE..NTM.E.KKNL.S..NRADI.E..I..L....IEILQ...ERELRLKRNEEILQE.S..IRK.NIR.IGIPEGEE..K.AESLFKEIIA.NFP
Retrocopy
QSEVLERMNTMNEIKKNLQSLKNRADIMEDGIRNLDEGLIEILQMTKERELRLKRNEEILQEESD*IRKCNIRIIGIPEGEEREKTAESLFKEIIAENFP


Parental protein
NLGKELEIQVKEAKRIPNYITVKRHS-PRHIVEKLAKVNDKEKVLRAANK---KQQIITYKGAPIRLSADFSTETLQARREWSDIFKALKDKNLQPRILY
NL...LE..V.E..R.PNYI.VKR.S.PRHI..KLAKVNDKEK.LR........Q..ITYKG..IRLSADF..E..QAR.E..D.FK.LK..N.QPR..Y
Retrocopy
NLENKLELHVNETIRTPNYIKVKRPS\PRHILVKLAKVNDKEKLLRVTRQNIGQQKKITYKGPSIRLSADF*AES*QARKELNDTFKILKHNNFQPRLFY


Parental protein
P
P
Retrocopy
P


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide