RetrogeneDB ID:
retro_ecab_1019
Organism:
Horse ( Equus_caballus )
Location:
9:77294339-77294712 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.29 %
Coverage:
75.3 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
IMMP1L
Parental gene aliases:
No gene alias available
Parental gene description:
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317]

Genomic region (view in browser)





>retro_ecab_1019
GTGCTACATGATGTTTTGGGAAAAAAGCTTTTGACTTATTGGCTATACTGTTGAGTATGG
CTGTTTAGATCACAGTGCTTTTGAATACACTGGGGGTATTGTTATGTGTTCTGGACTAAT
AGAGCCTTCAATACAAAATTAATATATTGTCTTTGCAGAAAACCTTAGTCAACATTTTTA
TAGTATCCAAAGAGGTGACTCTGTGATTGCAAAAAGCCTGAGTGATCCAAAATCAAATAT
TTGTAAAAGAGCAATTGGTTTGGAAGGAGACAAAATCCTCAACAATGGTCCATCACCTTT
TTTTAAAAGCCACAGTTATGTGCCAATGGGTCATGCTTGATTAAAAGGGGCACAGATTCC
AGGTACTATGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRGILGK-TFRLVGYTIQYACIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVCAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTSRPS
.L...LGK..F.L.GYT..Y.C..H.AFEY.GG.VMCSG...EP.IQN..IV.AENLS.HFY.IQRGD.VIAKS.SDPKSNICKR.IGLEGDKIL...PS
Retrocopy
VLHDVLGK\SF*LIGYTVEYGCLDHSAFEYTGGIVMCSG-LIEPSIQN*YIVFAENLSQHFYSIQRGDSVIAKSLSDPKSNICKRAIGLEGDKILNNGPS


Parental protein
DFFKSHNYVPTGHVWLEGDNLQNSTD
.FFKSH.YVP.GH..L.G........
Retrocopy
PFFKSHSYVPMGHA*LKGAQIPGTME


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide