RetrogeneDB ID:
retro_ecab_102
Organism:
Horse ( Equus_caballus )
Location:
25:29669291-29669570 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.04 %
Coverage:
94.95 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_102
AAGGAGGTGGAGGAGACACTGGAGCGACTTCAGAGTCAAAAAGGAGTGCAGGGAATCATG
GTGGCGAACACAGAAGGCATTCCCATCAAGAGCACCATGGACGACCCCACCACCGCACGG
TACGCCAAGCTCACGTGCAACTTGAAGGCCCGGAGCACCGTGCACACAAGTGACCCCCAG
AATGACTTCACCTTCCTTCGAATTCGCTCCAAGAAAAATGAAATTATGGTTGCACCAGAT
AAAGACTATTTCCTGATCGTGATTCAGAATCCAACTGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVREIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQNPTE
EVEETL.RLQSQKGVQGI.V.NTEGIPIKSTMD.PTT..YA.L..N..LKARSTV...DPQND.TFLRIRSKKNEIMVAPDKDYFLIVIQNPTE
Retrocopy
EVEETLERLQSQKGVQGIMVANTEGIPIKSTMDDPTTARYAKLTCN--LKARSTVHTSDPQNDFTFLRIRSKKNEIMVAPDKDYFLIVIQNPTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide