RetrogeneDB ID:
retro_ecab_1021
Organism:
Horse ( Equus_caballus )
Location:
9:24469041-24469918 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.86 %
Coverage:
99.31 %
Frameshifts:
1
Stop codons:
8


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1021
AAAGAAAAGAATATGTTCCAAATAAGGCAATAGGACAAATCCTCAGAAAAAGAACTAAAG
GAAACAGAGATAAACTATCTGCCTGATAAAAAGTACAAGCTAACAGTCATAAGGATGCTC
ACTGATCTGGGGAGAAGAAAAGAAGAACACAGTGAGAATGTCAACAAAGAATTAGGAAAT
ATAAAAAAGAACCAATCAGAACTGAAGAATACAATATCGGAAAAGAAAACTTCACTAGAG
GGAATCAACAGCACGGTAGATCACACAGAAAAATAGATCAGCATTCTGGAGAAAAGTTTA
AGGAAATCAAGCTGAACAGAAAAAGAAAAAAGAATTAAAAAGAATGAGGACAGTCTAAGG
GACCTCTGGGACTACATCAAGCATACTAACATTTACATTATAGGTGTCCCAGAAGGAGAA
GATTGAGACAAAGGGGCATAAAACTTATTTGAAGAAATAATAGCTGAATGCTATTCAGCT
GGGGAAGGAAACAGACATCCAGGAGAAGGAAGCACAGAGAGCACCAAACAAGATGAACTC
CAAGAGGCCCACACTAAGACACATTATAATTTAAATGTCAAAAATTAAAGAGAAAAATAA
AATCCTAAAAGCTGCAAGAGAGAAGCAACAAGTTACATACAAAGGAAACCTCATAAGGCT
ATCAGCTGGCTACTCAGCAGAAACCTTACAGGCTAGAAGGAAGCGGCACAATATACTCAA
AGTGCTGAAAGCAAAAAAACCTGTAACAAGAATACTCCATCTGGCAAGGTTATCATTCAG
AATAGGAGGAGAGAGAAAGAGTTTTCTAAATAAGCAAAAACTGAAGGAATTCACCACCAT
TAAAATAGCCTTACAATAAATGTTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
.....FQ....DK..EKEL.ETEI..LPDK..K..V...LTDLGRR..EHSEN.NKEL.NIKK.QSE.KNTI.E.K.SLEG.NS.VD.TE..IS.L...L
Retrocopy
KEKNMFQIRQ*DKSSEKELKETEINYLPDKKYKLTVIRMLTDLGRRKEEHSENVNKELGNIKKNQSELKNTISEKKTSLEGINSTVDHTEK*ISILEKSL


Parental protein
EEVTQAEQIKEKMKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGA-EIYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNK
................DSLRDLWD.IK.T.I.I.GVPE.E..DKGA...YL.K...N...L.KE.D.Q..EAQ.APN..N.KR.T.RHII...S.....K
Retrocopy
RKSS*XXXXXXXXXXEDSLRDLWDYIKHTNIYIIGVPEGED*DKGA\KTYLKK**LNAIQLGKETDIQEKEAQRAPNKMNSKRPTLRHIII*MSKI-KEK


Parental protein
ERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKKP-PRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
..ILKAARE.QQVTYKGN.IRLSA..SAETLQARRK.H.I.KVL..KKP..RIL.LAR.SF...GE.K.F..KQKLKEF.T.K.ALQ.MLKGLI
Retrocopy
NKILKAAREKQQVTYKGNLIRLSAGYSAETLQARRKRHNILKVLKAKKPVTRILHLARLSFRIGGERKSFLNKQKLKEFTTIKIALQ*MLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide