RetrogeneDB ID:
retro_ecab_1023
Organism:
Horse ( Equus_caballus )
Location:
9:31540015-31540891 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.76 %
Coverage:
98.97 %
Frameshifts:
2
Stop codons:
7


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1023
AGACAAATGAATATGTTCCAAATAAGGGAATAGGACAAGTTCTCAGAAGAAACACTAAAT
GAAACAGAGATAAATAATCTTCCTGATAAAGAGTACAAACTAACAATCATAAAGATGCTT
ACTGAACTTGGAAGAAGAAAGGATGAACTCAGTGAGAACTTCAACAAAGAATTGGAAAAT
ATAAAAAAGAACCAATCATAACTGAAGAATACAATACTGGAAATGATAAATTTACTAGAG
GGACTCAATAACACAGTAGATGATACATAAGAACAGATCAGTGAGCTGGATGAAAGACTA
GAGGAAATCACCCAAGGTGAATAGATGAAAGAAAAAAGAATTAAAAAGAACAAGGACAGT
ATAAGGTACCTCTGGGACAACATCAAGCACATTAACATCCACATTATAGGGGTCCAAGAA
GGAGAAGAGAGACAAAGAGGCATAGAATCTAGTTGAAAAAATAGCTGAAAACTTTCCCAA
CCTAAGGAAAGAAACAGATATCCAAGTACAGGAAGCACAAAGAACACCAAACAAGATAAA
CCCAAAGAGGCATACACCAAGACACATTATAATTAAAATACCAAGAATTAAAGATAAATA
GAGAATCCTAAAAGTGTCAAGGGAAAGGCAAAAAGTAACATACAAAGGAAACCCCATAAG
GCTATCAGCTGATTTCTCAGCAGAAACCTACAGGCTAGAAGGGAGTGGCAAAATATATTT
AAAGTGCTGAAAGGAAAAAAACCTACAGCCAAGAATATTCTACTTGGCAAGGTTATTATT
TAGAATGGAAGAGAGATAAAGAGTTTTCCAGACAAGCAAAAACTAAAAGTGTTTATCACC
AAGAAACCCACCTTACAACAAATGCTAAAGGGACTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQ...FQ..E.DK..E..LNETEI.NLPDK..K....K.LT.LGRR.DE.SENFNKELENIKK.QS..KNTI.EM.N.LEGLN..VDDT.E.IS.LDERL
Retrocopy
RQMNMFQIRE*DKFSEETLNETEINNLPDKEYKLTIIKMLTELGRRKDELSENFNKELENIKKNQS*LKNTILEMINLLEGLNNTVDDT*EQISELDERL


Parental protein
EEVTQAEQIKEKM--KKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAEIYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRN
EE.TQ.E..KEK...K..DS.R.LWDNIK...I.I.GV.E.E..DK.A.....KIAENFP.L.KE.D.QVQEAQ..PN.INPKRHTPRHII.KI......
Retrocopy
EEITQGE*MKEKRIKKNKDSIRYLWDNIKHINIHIIGVQE\EKRDKEA*NLVEKIAENFPNLRKETDIQVQEAQRTPNKINPKRHTPRHIIIKIPRI-KD


Parental protein
KERILKAARERQQVTYKGNSIRLSADLSAET-LQARRKWHSIFKVLNRKKPPRILYLARSSFIMEG-EIKCFPDKQKLKEFITKKPALQEMLKGL
K.RILK..RERQ.VTYKGN.IRLSAD.SAET.LQARR.W..IFKVL..KKP.....L.....I..G.EIK.FPDKQKLK.FITKKP.LQ.MLKGL
Retrocopy
K*RILKVSRERQKVTYKGNPIRLSADFSAET/LQARREWQNIFKVLKGKKPTAKNILLGKVII*NGREIKSFPDKQKLKVFITKKPTLQQMLKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide