RetrogeneDB ID:
retro_ecab_1024
Organism:
Horse ( Equus_caballus )
Location:
9:41120241-41120645 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.19 %
Coverage:
83.03 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1024
CCGCCTAAGTTCAACCCCAGTGACATCAAAGTCATGTACCTGAGGTGCACCAGTGGGGAA
GTGGGTGCCGCGTCTACCCTGGCCCCCAAGTTCAACCCCCTGAGTCTGTCTCCAAAAAAG
CCTGGTGATGCCAATGAAACTAGTAATTGGAAGGGTCTGAGGATTAGACCAAAACTGACC
ATCCAGAACCAACAGGCTCAGATTGAGGTGGTACCTTCTCCTCTGCCCTGATCATCAAAG
ACCTCAAGGAACTGCCAAGAGACAGGAAGAAGCAGAGAAACATTAAGCACAATGGAAATG
TCATGTTTGATAAGACTGTCAGCATTGCCTGACAGATGTGGCACTGATCATTGGCCAGAG
AACTCCTTGGAACTGTTAAAGAGATCCGGGGGACAGCCCAGTCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPS-ASALIIKALKEPPRDRKKQKNIKH
PPKF.P..IKV.YLRCT.GEVGA.S.LAPK..PL.LSPKK.GD..A..T..WKGLRI..KLTIQN.QAQIEVVPS..SALIIK.LKE.PRDRKKQ.NIKH
Retrocopy
PPKFNPSDIKVMYLRCTSGEVGAASTLAPKFNPLSLSPKKPGD--ANETSNWKGLRIRPKLTIQNQQAQIEVVPS/SSALIIKDLKELPRDRKKQRNIKH


Parental protein
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQS
.GN..FD..V.IA.QM.H.SLAREL.GT.KEI.GTAQS
Retrocopy
NGNVMFDKTVSIA*QMWH*SLARELLGTVKEIRGTAQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide