RetrogeneDB ID:
retro_ecab_1025
Organism:
Horse ( Equus_caballus )
Location:
9:46519188-46519811 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
72.25 %
Coverage:
70.65 %
Frameshifts:
2
Stop codons:
2
Parental gene:
Parental gene symbol:
RPS2
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]
Genomic region (view in browser)
>retro_ecab_1025
CTTTTCTCCCTGCCCATCAAGGAATCTGAGAATATTGACTTTTTTTCTGGGGGCATCCCT
CTAGGATGAGGTTTTGAAGATCATGCCTATACAAAAGCAGACCCATACTGGCCAGCGGAC
AAGGTTCAAGGCATTTGTTGCCATTGGGGATTACAATGGACTTATCAGTCTGGGTGTTAA
GTGCTCTAAGGAGGTAGCCACTGCCATCTGTGGGGCCATCATACTTGCAAAGCTCTTCAT
CATCCCCATGCTGCAAGGGTACTGGGGGAACAAGATCAGTTAGCCCCTTGCAAGGTGACT
GGCCACTGTGGCTCTACTGTGGCTCTGTGCTGGTGTGCCTCATCCCTGCTTCCAGAGGCA
CTGGCATCATCTTAGCCCCTGTGGCCAAGAAGCTGCTGCTGATGGCCAGTATTGACGACT
GCTACACCCCAGCCAGGGACTGCACTGCTACCATGGGCAACTTTGCCAAGGCCAGCTTTG
ATGCCATCTCCAAGATCTACAACTATCTCACCTCCGATCTCTGGAAAGAAAACATGTTCA
TCAAGTCTTTTTACCAGAAATTCACTGACCTTCCTGTAAAGACCCACACCAAAGTCTCTG
TGTAGAGGACCCAGCTTCCAGCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.07 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.13 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
