RetrogeneDB ID:
retro_ecab_1026
Organism:
Horse ( Equus_caballus )
Location:
9:49203492-49203762 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.35 %
Coverage:
98.9 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
LAMTOR5
Parental gene aliases:
No gene alias available
Parental gene description:
late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:HGNC Symbol;Acc:17955]

Genomic region (view in browser)





>retro_ecab_1026
AAGGCAACTTTGGAGCAGCACTTGGAGGACACAATGAAGAATCCATCCATTGTTGAAGTT
CTGTGCACAAATTCACAAGGACTTAATCGGGCTGCCATGGGACCTTGTTAGATGAGCATG
CTGGGGTGATGTCTGTTCTAGCCCAGCAAGCACTTACGCTAGACTCTGACCCCCGCTAAT
ATTCCTGTGGTATGTCTCAAACCAGATAATGGGAATATTATTATCCAGAAACACAACGGT
ATCACAGTGGCAGTGCACGAAATGGCCTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EATLEQHLEDTMKNPSIVGVLCTDSQGLN-LGCRGTLSDEHAGVISVLAQQAAKLTSD-PTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS
.ATLEQHLEDTMKNPSIV.VLCT.SQGLN..GC.GTL.DEHAGV.SVLAQQA..L.SD.P..IPVVCL..DNGNI.IQKH.GITVAVH.MAS
Retrocopy
KATLEQHLEDTMKNPSIVEVLCTNSQGLN/SGCHGTLLDEHAGVMSVLAQQALTLDSD\PANIPVVCLKPDNGNIIIQKHNGITVAVHEMAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide