RetrogeneDB ID:
retro_ecab_1027
Organism:
Horse ( Equus_caballus )
Location:
9:50639306-50639636 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
70.0 %
Coverage:
66.67 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1027
GTCAGGATTACAGTGAAACTGACTGTTCAGAACAGACAGGCTCAGACTGAGGGGGTATCT
TCTGCCTCTGCCCTGACCATCAAAAATGTCAAGGAACCAACCAGAGATGGAAAGAGGCAG
AAAGATATTAAGCATACTAACAATAGCAATTTTCATGAGATTGTTAATATTGCCTGACAG
ACACAGCACCAATCTTTGGCCAGAGAACTCTCTGGAACCATTAAAGAGATCCTGGGGACT
GCTCAGTTTGCAAGCTGCAATGCTGATGGCTGCCACCCACATGACATCATCAATGACATC
AACAGTCGTATGGTAAAATGCCCAACTAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.4
SRP021940_embryo 0.05
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDI
.RITVKLT.QNRQAQ.E.V.SASAL.IK..KEP.RD.K.QK.IKH..N..F.EIVNIA.Q..H.SLARELSGTIKEILGTAQ...CN.DG.HPHD.I.DI
Retrocopy
VRITVKLTVQNRQAQTEGVSSASALTIKNVKEPTRDGKRQKDIKHTNNSNFHEIVNIA*QTQHQSLARELSGTIKEILGTAQFASCNADGCHPHDIINDI


Parental protein
NNGAVECPAS
N...V.CP.S
Retrocopy
NSRMVKCPTS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide