RetrogeneDB ID:
retro_ecab_1028
Organism:
Horse ( Equus_caballus )
Location:
9:56576223-56576831 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
75.49 %
Coverage:
58.43 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
MRPS31
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:16632]

Genomic region (view in browser)





>retro_ecab_1028
ACGACCAAGTCAGAGCTGCTCAGGCAGTTCCAGCAGCACTAGGAAGATTCAAAGACGCAG
AAAGATGGAGAAAGACGTAAAATTAGTTTTGGTAACATACTATCAGATATGAAAGTTGCC
GGATCTGCTACAGTTAGAGTTTGTGCAAGACCAGTGCATCAGATTTAGTTTAACAAAGGA
TCTGACAATGATCACAGCCAAGAGAAGACTGCTGATATTAGAAAACATCATAGGAAAAAT
ATACTCAAAGGGAAGAGACTCCATATTTTTGAGAGTAAGGCAGTTACTGAAGAAGCACCT
GAAACAGAGACATCACCTTCACTTGGGGTGTGGAATTCACTAAGCAGCTAGCCTCAGTAA
ATTCACAGCCCTTTCAAAATGGTTTTGAAGAGATGATCCAGTGGAGACATGAGGGGAAAC
TATGGGAGTTCCCAGTTAACAATGAAGCAGATTTTGATGAGGATGATTCAGGATTTCATG
AATATATATTTCTAGATAAATACTTGGAGAATTTTCCAAAGCAAGAACCAGTTCTCCACT
TCATGGAAATGGTGACCTGTGGTCTTTCCAAAAACCCATATCTGAGTGTTAAACAGAAAG
TCAATCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TTKSELLRQLRQHEEDSRAQKEGERPKISFSNIISDMKVAKSATARVSTRPVHQIQFDEGSDDYGGQEKTADLRK--RKNIFKGKRLNIFDLKAVTEEAP
TTKSELLRQ..QH.EDS..QK.GER.KISF.NI.SDMKVA.SAT.RV..RPVHQI.F..GSD....QEKTAD.RK..RKNI.KGKRL.IF..KAVTEEAP
Retrocopy
TTKSELLRQFQQH*EDSKTQKDGERRKISFGNILSDMKVAGSATVRVCARPVHQI*FNKGSDNDHSQEKTADIRKHHRKNILKGKRLHIFESKAVTEEAP


Parental protein
EAETAPSL-WDVEFAKQLAAVNEQPFQNGFEEMIQWTKEGKLWEFPINNEAGFDDDGSEFYEHVFLDKYLEDFPKQGPIRHFMELVTCGLSKNPYLSVKQ
E.ET.PSL.W.VEF.KQLA.VN.QPFQNGFEEMIQW..EGKLWEFP.NNEA.FD.D.S.F.E..FLDKYLE.FPKQ.P..HFME.VTCGLSKNPYLSVKQ
Retrocopy
ETETSPSL/WGVEFTKQLASVNSQPFQNGFEEMIQWRHEGKLWEFPVNNEADFDEDDSGFHEYIFLDKYLENFPKQEPVLHFMEMVTCGLSKNPYLSVKQ


Parental protein
KVEH
KV.H
Retrocopy
KVNH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide