RetrogeneDB ID:
retro_ecab_1029
Organism:
Horse ( Equus_caballus )
Location:
9:58740964-58741421 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.6 %
Coverage:
98.74 %
Frameshifts:
2
Stop codons:
5


Parental gene:
Parental gene symbol:
SFT2D1
Parental gene aliases:
No gene alias available
Parental gene description:
SFT2 domain containing 1 [Source:HGNC Symbol;Acc:21102]

Genomic region (view in browser)





>retro_ecab_1029
ATGGAGAGGCCGTGGAAGGTCCTGAGCAGCCAGGATGACAAGGAGCAGAACCTAACTGCA
AAGGGCCTGGATGACTTGTCCCTTAGTTTCAACACTAGATTGAATTGATTTGTCATATGC
TTTGTATGTGGCATTTCTGTTCTATCCTTGGAACTGGATTGCTGTGGTTTCTGGTGGCAT
AAAACTTTTTACACTCTTTTATATCCGGGGAAATATTGCTGTATGAGCTTTTTAATGGGC
CCCATGAGGCAACGGAAGGAAATGTTTGAAACAAGATTATCTTGCAATAATTATTATCCT
TTTTTGCTTCATATTTACCATTTGTGCTTCTCTTTGGGGACATAAGAAGGGACTGGCCTT
ATTGTTGAGCATATTGCAGTTCTTGTGAATGACCTGGTATAGTCTATGGTGGGTCCCATA
TCCTAGAGATGCAGTAATTAAATGCTATTCTGTCCTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEKLRRVLSGQDDEEQGLTSQVLDASTLSFNTRLKWFAICFVSGV-FFSLLGTGLLW-LPGGIKLFAVFYTLGNIAALASTCFLMGPVKQLKKMFETTRL
ME....VLS.QDD.EQ.LT...LD...LSFNTRL..F.ICFV.G..F.S.LGTGLLW...GGIKLF..FY..GNIA..A...F...P.....K......L
Retrocopy
MERPWKVLSSQDDKEQNLTAKGLDDLSLSFNTRLN*FVICFVCGI/FCSILGTGLLW/VSGGIKLFTLFYIRGNIAV*A---F*WAP*GNGRKCLKQDYL


Parental protein
FATVIMLLCFVFTLCAALWWHKRALALLFCILQFLSMTWYSLSYIPYARDAVIKCCSSL
....I...CF.FT.CA.LW.HK..LALL..ILQFL.MTWYSL...PY.RDAVIKC.S.L
Retrocopy
AIIIIL-FCFIFTICASLWGHKKGLALLLSILQFL*MTWYSLWWVPYPRDAVIKCYSVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide