RetrogeneDB ID:
retro_ecab_103
Organism:
Horse ( Equus_caballus )
Location:
16:74292708-74293056 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.71 %
Coverage:
94.4 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_103
ATGAAGCTCTTCACCTACAACCTGCTGAGCCTGCGTGTGGGGGTGGGGCCCCATGGTTTT
CCCCTGCACCTCCAGGCCACCAAGGTCCGTATCAACCCTGAGGACTTCAACCCCAACTCT
GTGGCACATATGATCCCCAAGGTGGAATGGGTGGCATTTCTGGAGGTGACCAATACTTTG
CATCTGATCAAGCTTCCCAAAGGACCAATACACGGGCATGAGCATGATGAGAAATTTCCG
AGGAAGATGCACATACTGCAGGAGACAGATGTGTTGGAGGGAATCCTGCAACGTCCAGCA
TATGGACATCTGCTCCCCATCAGCCGCAGGATCCCCAGCATGCTGATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKLLTHNLLSSHVRGVGPRGFPLRLQATEVRVSPVEFNPDFVARMIPKVEWAALLEAADTLHLAEVPREPIQGYERDEEFLRKMHHVLLEVDVLEGTLQC
MKL.T.NLLS..V.GVGP.GFPL.LQAT.VR..P..FNP..VA.MIPKVEW.A.LE...TLHL...P..PI.G.E.DE.F.RKM.H.L.E.DVLEG.LQ.
Retrocopy
MKLFTYNLLSLRV-GVGPHGFPLHLQATKVRINPEDFNPNSVAHMIPKVEWVAFLEVTNTLHLIKLPKGPIHGHEHDEKFPRKM-HILQETDVLEGILQR


Parental protein
PESGRVFPISRGIPNMLL
P..G...PISR.IP.ML.
Retrocopy
PAYGHLLPISRRIPSMLM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide