RetrogeneDB ID:
retro_ecab_1030
Organism:
Horse ( Equus_caballus )
Location:
9:59412366-59412672 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.89 %
Coverage:
60.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1030
ATGCCCCATCAAGGGGAGAATGTTAATAAAGAGACAGATTTTATAAGATAGAACCAAGTG
AAGATGCTGGAATTGTAAATTGCAGTAACTGAAATGACAATTCACTAGAGGGACTCAACA
GTAGATCTGTCTGAACTAGCAAAAGAAAGAAAGAGCAAACTTGAAGATCGATCAAAGGAG
ATTATGCAGTCCAAACAAGAAGGAGAAAACAGAATGGAGAGAAACAGTCTCAGAGAAATG
AGGGACACAATTAAGAGTACCAACATATGTGTAATGGGAGTACCAGAAGGAGAGGGGAGA
GAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDEHSGNFNKETDSIRKCQIEVTELKNTIPELT-NTLEGFNSR-LDE-AEERISELNDRA-ELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPE
M.....N.NKETD.IR..Q....EL.....E.T.N.LEG.NSR.L.E.A.ER.S.L.DR..E..QS.Q..E.RM....NSLRE..D.IK..NI...GVPE
Retrocopy
MPHQGENVNKETDFIR*NQVKMLEL*IAVTEMT/NSLEGLNSR\LSELAKERKSKLEDRSKEIMQSKQEGENRMER--NSLREMRDTIKSTNICVMGVPE


Parental protein
GEERDK
GE.R.K
Retrocopy
GEGREK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide