RetrogeneDB ID:
retro_ecab_1031
Organism:
Horse ( Equus_caballus )
Location:
Un0001:228060-228308 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
53.41 %
Coverage:
51.18 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1031
CAAATTCTCAAGCTGACAAGTAATGTCACTGAAATGAAAAACTCACTAGAGGAGTTCAAC
AGCAGATTTGAGCAGGCAGAAGAAAGGGTCGGTGAACTTGAAATTACCCAGCATGAGGAG
CAGAAAGAAAAAAGAATGAATAAAGATAAACAGAGCCTCAGGGACCTGTGGGATACCATC
AAACATATCAATATACTCATTATAGAAGTTCCAGAGAAGAAGAGAGATAGAAAGGGTCAG
AAAAAATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.15
SRP021940_embryo 0.43
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 1.64
SRP021940_testis 0.77

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRAELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPE-GEERDKGAENL
....L.....E..N.LE.FNSR...AEER..EL....E.TQ.E.QKEKRM.....SLR.LWD.IKH.NI.II.VPE..EER.KG.E..
Retrocopy
QILKLTSNVTEMKNSLEEFNSRFEQAEERVGEL----EITQHEEQKEKRMNKDKQSLRDLWDTIKHINILIIEVPE/EEER*KGSEKI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide