RetrogeneDB ID:
retro_ecab_1032
Organism:
Horse ( Equus_caballus )
Location:
Un0003:1225362-1226073 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.84 %
Coverage:
62.83 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
MRS2
Parental gene aliases:
No gene alias available
Parental gene description:
MRS2 magnesium transporter [Source:HGNC Symbol;Acc:13785]

Genomic region (view in browser)





>retro_ecab_1032
AAACTTAGCATCTTGCAGCCACTGAGCCTCGAGACACTGGAAGCTTCAGTGGATCCCAAA
CATCCTTCTGTAGACAGCAAACTGCACAGTGTACTACAAAATGGCAAAAGTCTACCAGAG
GTAGAAATGGATATTAAAATTTCTAAAGAGTCGCTTTTGGAGGTCTTGGAGGAAGAGGGG
TTGCTGGAAGAGTTCTGTCTGACAAGATGGAGTGACCCGCAAGTCTCTGAAGAGAACCGC
GCTGGGGCTGACGGCACAGAAGATGTGGAGCTGCTGTTGGAACACTGCTACCGAGCGGCT
GAGGATCTCCGCAGCGCAGCCCGCGAACTTCGGGGCTGACTGACGGTTCACAAAGAATTA
CGTTCTTCAGTCTGGACAGCACCGTAGCGAGATGACGAGGAGGAGCCTGCAGCTGACCGT
GGGAACCTGCTCTGTTCCACTCTGTGGACTAACGGCAGTTGCTTTTGGAGTGAATTTGGA
GTCTTGCCTCGCAGAGGACCGTAGAGTGTCTGGCTGGTTACAGGAATCCCGGTCGTGGGA
AGCGGCCTCGTCTGGAGGCGTTTGCTGTCATTCTTGGACGACAGCTTAAAGCTCCTTTGC
CCCCTGGGATGGTCTTTACCTAAAAAGACCCTCCAGGCAGAGAGAAGGATGGAAACAAAA
CACAGCTTCCGGCCGGGTGGACTCAGATCAAGCAGGAGCGTCCTCACGCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KLSILQPLILETLEALVDPKHSSVDRSKLHILLQNGKSLSELETDIKIFKESILEILDEEELLEELCLTKWSDPQVFEKSSTGIDHAEEMELLLENYHRL
KLSILQPL.LETLEA.VDPKH.SVD.SKLH..LQNGKSL.E.E.DIKI.KES.LE.L.EE.LLEE.CLT.WSDPQV.E....G.D..E..ELLLE...R.
Retrocopy
KLSILQPLSLETLEASVDPKHPSVD-SKLHSVLQNGKSLPEVEMDIKISKESLLEVLEEEGLLEEFCLTRWSDPQVSEENRAGADGTEDVELLLEHCYRA


Parental protein
AEDLSNAAHELRL-LIDDSQSIIFINLDS-HRNVMMRLNLQLTMGTFSLSLFGLMGVAFGMNLESSLEEDHRV-FWLITGIMFMGSGLIWRRLLSFLGRQ
AEDL..AA.ELR..L.D.SQ.I.F..LDS.HR..M.R..LQLT.GT.S..L.GL..VAFG.NLES.L.ED.RV..WL.TGI...GSGL.WRRLLSFL...
Retrocopy
AEDLRSAARELRG/LTDGSQRITFFSLDS/HRSEMTRRSLQLTVGTCSVPLCGLTAVAFGVNLESCLAEDRRV/VWLVTGIPVVGSGLVWRRLLSFLDDS


Parental protein
LEAPLPPMVASLPKKTLQADRRMEVKHSFRPDGLASSRNLLAN
L...L.P...SLPKKTLQA.RRME.KHSFRP.GL.SSR..L..
Retrocopy
LKL-LCPLGWSLPKKTLQAERRMETKHSFRPGGLRSSRSVLTH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide