RetrogeneDB ID:
retro_ecab_1033
Organism:
Horse ( Equus_caballus )
Location:
Un0004:1253391-1254044 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.22 %
Coverage:
98.66 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1033
CAAACAGAAGTTTTGGAGCTAAAGAATACAATAGAGAACTTCAACAGCACACTTGAACAA
ACAGAAGAGAGAATCAGCGAGCTAGAAGGCAAATCAATTGAAATTATCCAGTCAGAGGAG
AAAAAAGAAAAAGGAATGAAGAAAGCCTACGGGAATTATGAAACATCATCAAAAGAAATA
AGGTACACATAATTGGAGTCCCAGAAGAAGAAGAGAAAGGGATAGAAAGCTTATTTAAAG
AAATAATGGCTGAGAATTTCCCAAACCTAGGAAGAGATTTGGATATCCAAGTTCATGAAA
CTAATAGGTCGCCTCAAAGTTTCAATCCAAAATGATCTTCTCCAAGACACATAATACTAA
AATTGTCTACAACCAAAGACAAAGAGAAAATTAAAAGCAGCAAGAGAAAAAAAATTTATT
TCCTAAAAGGGAACCCCCATAAGGCTATCAGCAGATTTCTCAGCAGTGAACTTGCAGGTC
AGGAGAAAGTGGGATGATATATTCAGAATGTTAAAAGAAACTGCCCACCAAGAATACTTT
AACCAGCAAAGTTGTTCTTCAGAAATAAAGGAGAGATAAAGAATTTCCCAGATAAACAAA
AAGTGAGAGAATTCGTCATCACTAAAGCTGCTTTACAAGAAATGCTGAAGGGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSAITEKKSSLNGFNSRFKQVEERINLLDDILEEITRAEQKEEKRIR-QNENSLRELWDNIKCANIHVIGVPEERQRG-RKLFEEIIAEIFPNLRKETDT
.....E.K.....FNS...Q.EERI..L.....EI....Q.EEK.....NE.SLREL...IK....H.IGVPEE...G...LF.EI.AE.FPNL....D.
Retrocopy
QTEVLELKNTIENFNSTLEQTEERISELEGKSIEII---QSEEKKEK/RNEESLREL*NIIKRNKVHIIGVPEEEEKGIESLFKEIMAENFPNLGRDLDI


Parental protein
QVQEAQRVPNKTSPKRPTSRHIIIKMSKIKDKERILKAAR-ERQQVTYKGKPIRLSVDFSAKTLQVRREWHDIFKV-KEKNLQPRILYPARLSFTMEGEI
QV.E..R.P....PK....RHII.K.S..KDKE.I.K....E......KG.PIRLS.DFSA..LQVRR.W.DIF......N..PRIL.PA.L.F...GEI
Retrocopy
QVHETNRSPQSFNPK*SSPRHIILKLSTTKDKEKI-KSSK\EKKFIS*KGTPIRLSADFSAVNLQVRRKWDDIFRM/VKRNCPPRIL*PAKLFFRNKGEI


Parental protein
KSFQDKQKLKEFITKKPILQEMLKG
K.F.DKQK..EF...K..LQEMLKG
Retrocopy
KNFPDKQKVREFVITKAALQEMLKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide