RetrogeneDB ID:
retro_ecab_1034
Organism:
Horse ( Equus_caballus )
Location:
Un0004:1184262-1184602 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.69 %
Coverage:
91.2 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_1034
AAGAAGAGCCGTTCTGCCACCAACAAGGTAGTGACCATAAAATATACCATCAACATTCAC
AAGCACATCCATGAAGTGAGCTTCAAGAAGCTGCCCCTCGGGCACTCAAAGAGATCCAAA
AATTTTCCATGAAGGACATAGGAACTCCAGATGTGCACATTGACACCAAACTTAACAAAA
CCACCCAGGCTAAAGAAATAAGGAATGTCCCATGCTGCATTCGTGTAAGTTGTCCAGAAA
ATGTAATGAGGATGAAAATCCACCAAATAAGCTCTATATATTGGTTATCTATGTACTTCT
CGCCACTTTCAAAAGTCTACAGATAGTCAATGTAGATGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKGRSAINEVVTREYTINIHKRIHGVGFKK-RAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRV-RLSRKRNEDEDSPNKLYTLVTY
KK.RSA.N.VVT..YTINIHK.IH.V.FKK..APRALKEI.KF.MK..GTPDV.IDT.LNK...AK.IRNVP..IRV..LSRK.NEDE..PNKLY.LV.Y
Retrocopy
KKSRSATNKVVTIKYTINIHKHIHEVSFKK/AAPRALKEIQKFSMKDIGTPDVHIDTKLNKTTQAKEIRNVPCCIRV/KLSRKCNEDENPPNKLYILVIY


Parental protein
VPVTTFKNLQTVNVDE
V...TFK.LQ.VNVDE
Retrocopy
VLLATFKSLQIVNVDE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide