RetrogeneDB ID:
retro_ecab_1035
Organism:
Horse ( Equus_caballus )
Location:
Un0006:1038617-1039485 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.82 %
Coverage:
98.63 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1035
AGACAAAAGAATATATTCCAAGTAAGTGAACAGGACAAAACCCCAGAAAAAGGACTAAAT
GAAACAGAAATAAGTGACCTACTCGACAAAGCATTCAAGCAAAATCTCATAAGGATGCTC
AGAGATATTGGGAGAAGACTGCATGAACACAGTGAGCTCATCAGCAAAGAATTGGAAATT
AGAAAAAAGAACCAATCAGAAATGATGAATACAATGCTGGAAATGAAAAATTAACCATAG
GGACTCAATAGCAGAATAGAGGATGCAGAAGAACTGATCAGCGAGCTAGACAAAAGACTA
GAGGAATTCACCCAAGCTGAACAGGAAAAAGAATTAGACAAAATGAGAACAGTCTAAGGG
AATTCTGGGACAATATCAAGCATGCTAACATTCGAATTATAGGCATCCCAGAAGAAGAAG
AGAGAGACAAAGGGGCAGAAAATTTATTTGAAGAAATAATGAAAATTTTCTTAATATGAG
GAAGGAAACAGACATCCAAGTACAGGAAGCACAGAGAGCTCCAAACAAGATAAGCCCAAA
GAGACCCACACCAAGACATATTATAATTAAAAGGTCCAAAAATAAAGGTAAACAGAGAAT
CCTAAAAGCAACAAGAGAAAGGCAAAAAGTGACATACAAAGGAAAGCCCTTAAAGCTGTC
AGTGGACTTCTCAGCCAAAACCCTTTAGATGAGGAGAAAATGGCATGATGTATTTAAAGT
GCTAAAAGGAAAAAATCTAGAGCCAAGAATACTCTATCCATCAAGGTTGTCATTCAGAAT
GGAAGGCGAGAGAAAGAGCTTCCGAGACAAGCAAATGTTAAAGGAGTTTATCACCAAGAA
AGCAGTTCTACAAGAAATGTTGAGGGGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQK-VKLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQ...FQV.EQDKTPEK.LNETEIS.L.DK.FKQ.....L.D.GRR..EHSE...KELE..KK.QSEM.NT..EMKN...GLNSR..D.EE.IS.LD.RL
Retrocopy
RQKNIFQVSEQDKTPEKGLNETEISDLLDKAFKQNLIRMLRDIGRRLHEHSELISKELEIRKKNQSEMMNTMLEMKN*P*GLNSRIEDAEELISELDKRL


Parental protein
EEVTQAEQIKEKMK-KTDSLRDLWDNIKCTKIRITGVPEEEG-DKGAEIYLIKIA-ENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRN
EE.TQAEQ.KE..K....SLR..WDNIK...IRI.G.PEEE..DKGAE.....I..ENF....KE.D.QVQEAQ.APN.I.PKR.TPRHII.K.S.....
Retrocopy
EEFTQAEQEKELDK/NENSLREFWDNIKHANIRIIGIPEEEERDKGAENLFEEIM/ENFLNMRKETDIQVQEAQRAPNKISPKRPTPRHIIIKRSK-NKG


Parental protein
KERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKG
K.RILKA.RERQ.VTYKG....LS.D.SA.TL..RRKWH..FKVL..K...PRILY..R.SF.MEGE.K.F.DKQ.LKEFITKK..LQEML.G
Retrocopy
KQRILKATRERQKVTYKGKPLKLSVDFSAKTL*MRRKWHDVFKVLKGKNLEPRILYPSRLSFRMEGERKSFRDKQMLKEFITKKAVLQEMLRG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide