RetrogeneDB ID:
retro_ecab_1039
Organism:
Horse ( Equus_caballus )
Location:
Un0021:179445-180154 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.77 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1039
CAAGAATTGGAAAATATAAAAAAAAATGAAAGGAAGAATACAGTAGTAGAAATGAAAAAT
TCACTAGAGGAACTCAATAGCAGAGTAGATGATACAGAAGAATGGATCAGCCAGCTGGAC
AAAAGAGTAGGGGAAATCACCCAAGCTGAACAGATAAAAGAAAAAGGAACTAAAAAGAAC
CAACAATCTAAGTTAATTCTGGGACATCATTAAGCCCATTATCATTCATATTATAGGTGT
CCCAGAAGGAGAAGAGAAAGACGAAGGGGTGAGAGAATCTATTCAAAGAAATGATAGCTG
GAAACTTTCCTAACCTAAGGAAAGAGGCATCCAAGCACAGCAAGCACAGAGATCACCAAA
CAAGATAATCCGAAAGAGGCCCACACCAAGACACATTGTAATTGAAACGTCAAAAATTAA
AGATAAAGAGAGAATCCTAAAAGCCACAAGAGAAAGGCAACAAGTGACATACAAAGGAAA
GCCCATAAGGCTGTCAGCTGACTTCTCAGCTGAAACCTTGCAGGTTAGAAGAGAGAGGCA
GGATATATTTCAAGTGCTGAAAGGAAAAAACCTACAGCCAAAAATACTCTACACAGCAAG
GTTTTCACTCAGAATGGAAGGAGAGAGAAAGAGTTCCCCAGACGAGCAAAAATTAAAGGA
GTTCATCCCCAAGAAGCCAGTTTTACAGGAAATGCTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KELENIKKNQSEMKNTILEMKNSLEGLNSRVDDTEEWISKLDERLEEVIQAAQIKE-KGIKKNKDSVRDLWNNIKHANIHIIRVPEGGERDKGTEKLFEE
.ELENIKKN..E.KNT..EMKNSLE.LNSRVDDTEEWIS.LD.R..E..QA.QIKE.K..K.........W..IK...IHII.VPEG.E.D.G.......
Retrocopy
QELENIKKN--ERKNTVVEMKNSLEELNSRVDDTEEWISQLDKRVGEITQAEQIKE\KELKRT-NNLS*FWDIIKPIIIHIIGVPEGEEKDEGVRESIQR


Parental protein
IIANFPNLRKGTDIQTQEAQRAPNKINPKRPTPRHIIIKMSVIKDKERFLKATRERKQNLTSRGSSIRFSADFPSETLEARRQWAGIFKVLKEKNCQPRI
.........K...IQ.Q.AQR.PNKI..KRPTPRHI.I..S.IKDKER.LKATRER.Q..T..G..IR.SADF..ETL..RR....IF.VLK.KN.QP.I
Retrocopy
NDSWKLS*PKERGIQAQQAQRSPNKIIRKRPTPRHIVIETSKIKDKERILKATRERQQ-VTYKGKPIRLSADFSAETLQVRRERQDIFQVLKGKNLQPKI


Parental protein
LRPAKLPFKSEGDIRTFPN--KLGEFITTRPTLRETLKGVL
L..A......EG.....P...KL.EFI...P.L.E.LKG..
Retrocopy
LYTARFSLRMEGERKSSPDEQKLKEFIPKKPVLQEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide