RetrogeneDB ID:
retro_ecab_104
Organism:
Horse ( Equus_caballus )
Location:
4:94035510-94036008 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.4 %
Coverage:
85.13 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_104
ATGCTCAGGCTTCAGAAGAGACTTGCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAGGTC
TGGCTGGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGG
AAGCTGATCAAAGATGGCCTGATCATCCGGAAGCCTGTGACTGTCCATTCCCGGGCTCGA
TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCATATGGGCATCGGTAAGCGAAAG
GGTACTGCCAATGCTCGAATGCCAGAGAAGGTAACCTGGATGAGGAGGATGAGAATCCTG
CGCCGGCTGCTTAGAAGATACCGTGAATCTAAGAAGATTGACCACCACATGTATCACAGC
CTGTACCTGAAAGTGAAGGGTAATGTGTTCAAAAACAAGCGGATTCTCATGGAACACATC
CACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTTCTGGCGGACCAGGCTGAGGCCCGC
AGGTCTAAGACCAAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 5.81
SRP021940_cerebellum 3.04
SRP021940_embryo 11.55
SRP021940_placental_villous 6.75
SRP021940_synovial_membrane 9.53
SRP021940_testis 4.87

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL
Retrocopy
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL


Parental protein
RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKE
RRLLRRYRESKKID.HMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKE
Retrocopy
RRLLRRYRESKKIDHHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide