RetrogeneDB ID:
retro_ecab_1040
Organism:
Horse ( Equus_caballus )
Location:
Un0057:51363-51988 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.69 %
Coverage:
74.73 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1040
AATACAGTAGTAGAAATGAAAAATTCACTAGAGGAACTCAATAGCAGAGTAGATGATACA
GAAGAATGGATCAGCCAGCTCGACAAAAGAGTAGGGGAAATCACCCAAGCTGAACAGATA
AAAGAAAAAGGAACTAAAAAGAACCAACAATCTAAGTTAATTCTGGGACATCATTAAGCC
CATTATCATTCATATTATAGGTGTCCCAGGAGGAGAAGAGAAAGACGAAGGGGTGAGAGA
ATCTATTCAAAGAAATGATAGCTGAAAACTTTCCTAACCTAAGGAAAGAGACATCCAAGC
ACAGCAAGCACAGAGATCACCAAACAAGATAATCCCAAAGAGGACCACACCAAGACACAT
TGTAATTGAAACGTCAAAAATTAAAGATAAAGAGAGAATCCTAAAAGCCACAAGAGAAAG
GCAACAAGTGACATACAAAGGAAAGCCCATAAGGCTGTCAGCTGACTTCTCAGCTGAAAT
CTTGCAGGTTAGAAGAGAGTGGCAGGATATATTTCAAGTGCTGAAAGGAAAAAACCTACA
GCCAAAAATACTCTACACAGCAAGGTTTTCACTCAGAATGGAAGGAGAGAGAAAGAGTTC
CCCAGACGAGCAAAAATTAAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STILKMKNSLEGLNSRVDDTEEWIKKLDEKLEEISQVNQV-KEKTILKNDSKIKELWDNIKHANIRIISVPGGEERH-KGEENLFEEIIDENFPNLRKET
.T...MKNSLE.LNSRVDDTEEWI..LD....EI.Q..Q..K.K..LK........WD.IK...I.II.VPGGEE...KG.ENLF.E.I.ENFPNLRKET
Retrocopy
NTVVEMKNSLEELNSRVDDTEEWISQLDKRVGEITQAEQI\KKKE-LKRTNNLS*FWDIIKPIIIHIIGVPGGEEKD\KG*ENLFKEMIAENFPNLRKET


Parental protein
DIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIK-DKERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEG
..............S...P.......K..K.K.DKERILKA.RER..VTYKGKPIRLSADFSAE.LQ..REW.DIF.VLKGKNLQP.I.Y..R.S.RMEG
Retrocopy
S-KHSKHRDHQTR*SQRGPHQDTL*LKRQKLK/DKERILKATRERQQVTYKGKPIRLSADFSAEILQVRREWQDIFQVLKGKNLQPKILYTARFSLRMEG


Parental protein
EIKRFPDKQNVKE
E.K..PD.Q..KE
Retrocopy
ERKSSPDEQKLKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide