RetrogeneDB ID:
retro_ecab_1047
Organism:
Horse ( Equus_caballus )
Location:
Un0613:3213-3453 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.25 %
Coverage:
52.98 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS13
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Genomic region (view in browser)





>retro_ecab_1047
ATGGGTCACACGTATGTTCCTGGGAAGGACTTGTCCCAGTAGGCTCTGCCCCTCTGCCAC
AGCATCCCCACCTGGCTGAAGATGATGTCTGATGACACAAAAGAGCACTTCTACAAACTG
GCTAATAAGGGCCTGACTCCCTCACAAGCTGATGTGGTCCTGAGAAACTCACATGGCACT
GAACAAGTATGTTTTGTGAGAGGCAATAAAACCTTGAGAATTCTTCAGTACAAAGGACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL
MG....PGK.LSQ.ALP...S.PTWLK..SDD.KE..YKLA.KGLTPSQ..V.LR.SHG..QV.FV.GNK.LRIL..KGL
Retrocopy
MGHTYVPGKDLSQ*ALPLCHSIPTWLKMMSDDTKEHFYKLANKGLTPSQADVVLRNSHGTEQVCFVRGNKTLRILQYKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide