RetrogeneDB ID:
retro_ecab_1049
Organism:
Horse ( Equus_caballus )
Location:
Un1813:3896-5012 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.74 %
Coverage:
87.38 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
FBXL3
Parental gene aliases:
No gene alias available
Parental gene description:
F-box and leucine-rich repeat protein 3 [Source:HGNC Symbol;Acc:13599]

Genomic region (view in browser)





>retro_ecab_1049
GATCAGGCCCGCGCATTTTCTGTATGTAGGAGATGGAACGAAGTTTTTCATATCCCTGAC
CTTTGGAGAAAGTTTGAATTTGAACTGAACCAATCAGCAACTTTGTCTTTTCAAGCCACT
CCTCGTGATCTCATTCAGCAGATCTTTAAAAGGCATGTTGCCTGTCTCCAGTATGTCAGC
TTTAAGGTTGATAGCAGTACTGAATCAGCAGAGGCTGCCTGCGATATATTTTCTCAGCTG
GGAAATGGTTCTCCACACCTTGGGCTTGATTTCTAGGGCCAATCCAAGTTTTATGAACGT
GTCAAAGTCTCATTTTGTGTCAGCACTTACACTTGCTTGTGTCAACTCAAAATCATTATC
ATCAATCAAACTTGAAGACCCACCCATGGATGACCCTTCACTGAAGGTTCTGGTGGCCAA
TAATAGTGATACTCTAACACTCCTAAAAATGAGCAGCTGTCCTTATGTTTCATCTGATGG
AATCCTTTGTGTAGCTGATCATTGTCAAGGCCTTAGAGAACTGGCATTGAATTATTACAT
TCCAAGTGATGAACTTCTGGCCCTTTCAAGTGAGACTCATGTTAACCTTGAACATCTTCG
AATTGATGTTGTGAGTGAAAATCCTGGACAAAGTAAATTTCATTCCATTAAAAAACAAAG
TTGAGATGCACTTATTAAACACTCCCCTGGAGTTAATGTTGTCATATACTTCTTTTTAAA
CGAAGAGGAATTTGTGACATTCTTCACAGAAGAATCCCCTGTCACTCATCTTTATTTCGG
TCGGTCAGTAAGCAAAGCGGTCCTAAGACGGATAGGTCCTATCTGCCCACGCCTAGTTGA
GTTAGTGGTGTGTGCAAACGGTCTTCAGACTCTTGACAATGAGCTGATCTGTATTGCTCA
ACACTGTAAAAACTGAACAGCCTTGGGCCTCAGTGCATGTGAAGTTTGCTGCAGTGCCGT
GGTTGAGTTTGTAAGGCTGGGTGGGAGGAGGCTCGCGCAGCTCTCTGTGATGGAGGAGGT
TCTGACCCGGATGGGGATTACGGCCTGGATAAAATTCACGCTGAAGCCTCCAAATACCTG
GGAAGAACGTGGTTCCCGGATGTCATGCCTGGCTGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DRAHASQVCRSWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKESAEAACDILSQLVNCSLKTLGL-ISTARPSFM
D.A.A..VCR.WN.VFH.PDLWR.FEFELNQ.AT....AT...LI.QI.KRH...LQYVSFKVDSS.ESAEAACDI.SQL.N.S...LGL.IS.A.PSFM
Retrocopy
DQARAFSVCRRWNEVFHIPDLWRKFEFELNQSATLSFQATPRDLIQQIFKRHVACLQYVSFKVDSSTESAEAACDIFSQLGNGS-PHLGL\ISRANPSFM


Parental protein
DLPKSHFISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLE
...KSHF.SALT...VNSKSLSS.K..D.P.DDPSLKVLVANNSDTL.LLKMSSCP.VS..GILCVAD.C.GLRELALNY...SDE.LLALSSE.HV.LE
Retrocopy
NVSKSHFVSALTLACVNSKSLSSIKLEDPPMDDPSLKVLVANNSDTLTLLKMSSCPYVSSDGILCVADHCQGLRELALNYYIPSDE-LLALSSETHVNLE


Parental protein
HLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIR
HLRIDVVSENPGQ..FH.I.K.S.DA.I.HSP.VN.V.YFFL.EEEF..FF..E.P.THLYFGRSVSK.VL.R.G..CPRLVELVVCANGL..LD.ELI.
Retrocopy
HLRIDVVSENPGQSKFHSIKKQS*DALIKHSPGVNVVIYFFLNEEEFVTFFTEESPVTHLYFGRSVSKAVLRRIGPICPRLVELVVCANGLQTLDNELIC


Parental protein
IAERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLI-PDQKYSLEQIHWEVSKHLGRVWFPDMMPTW
IA..CKN..A.GL..CEV.CSA.VEFV...G.RL.QLS.MEEVL..PD..Y.L..IH.E.SK.LGR.WFPD.MP.W
Retrocopy
IAQHCKN*TALGLSACEVCCSAVVEFVRLGGRRLAQLSVMEEVLT/PDGDYGLDKIHAEASKYLGRTWFPDVMPGW


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide