RetrogeneDB ID:
retro_ecab_105
Organism:
Horse ( Equus_caballus )
Location:
6:20526496-20527219 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
72.61 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_105
ATGGTGGACTACTACGAGGTGCTGGGCGTGCCCCGCCAGGCCTCGTCCGAGGTCATCAAG
AAGGCGTACCGGAAGCTGGCGCTCAAGTGGCACCCCGACAAAAACCCCGAGAACAAGGAG
GAAGCGGAGAGGAGATTCAAACAAGTGGCCCAGGCGTACGAGGTGTTGTCAGACGCCAAG
AAAAGGGACGTCTATGACCGATACGGCGAGGCAGGGGTGGACGAGGGCGGGGGCAGGGGC
GGGCTCTTCGAGGACCCCTTCGAGTACGTCTTCACCTTCCGCGACCCGGCCGAGGTCTTC
AGGGAGTTCTTCGGTGGCCAGGACCCATTTTCGTTTGACTTTTTCGGAGACCCGCTTGAG
AACATTTTTGGGGGTCGGAGGAACGCCCAGGGAAGCAGAAGCAGAGGGTCCACAAACCTT
TTCTCCTCCTTCAGTGAGTTTCCAATGTTTGGGGGTGCTTTTTCTTCTTTTGATGCAGGA
TTTCCTTCCTTTGGTTCCCTGGGGAATGGAGGCCTTTCTTCCTTCTCCATGTCCTGTGGT
AGTGGCGGGGCGGGCAACTTCACATCTTTGTCGACTTCCACCGAAATAGTGAATGGCAAA
AAAATCACCACCAAGAGAATCATTGAGAATGGCCAAGAAAGGGTGGAAGTGGAAGAAGAC
GGAGAGTTAAAGTCCCTGGTGATCAATGGCAAAGAGCAGTTGCTGCACATTGCCACCAAG
TAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.3
SRP021940_embryo 1.41
SRP021940_placental_villous 0.31
SRP021940_synovial_membrane 0.18
SRP021940_testis 257.87

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDLYDKYGKEGLNGGGGGGSHFDSPFEFGFTFRNPDDVF
MVDYYEVLGV.R.AS.E.IKKAYRKLALKWHPDKNPENKEEAER.FKQVA.AYEVLSDAKKRD.YD.YG..G...GGG.G..F..PFE..FTFR.P..VF
Retrocopy
MVDYYEVLGVPRQASSEVIKKAYRKLALKWHPDKNPENKEEAERRFKQVAQAYEVLSDAKKRDVYDRYGEAGVDEGGGRGGLFEDPFEYVFTFRDPAEVF


Parental protein
REFFGGRDPFSFEFFEDPFEDFFGSRRGPRGSRNRGTGSFFSAFSGFPSFGGGFPSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNFKSISTSTKTVNG
REFFGG.DPFSF.FF.DP.E..FG.RR...GSR.RG....FS.FS.FP.FGG.F.SFD.GF.SFGSLG.GGL.SFS....G..G.GNF.S.STST..VNG
Retrocopy
REFFGGQDPFSFDFFGDPLENIFGGRRNAQGSRSRGSTNLFSSFSEFPMFGGAFSSFDAGFPSFGSLGNGGLSSFSMSC-GSGGAGNFTSLSTSTEIVNG


Parental protein
RKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK
.KITTKRI.ENGQERVEVEEDG.LKSL.INGKEQLL....K
Retrocopy
KKITTKRIIENGQERVEVEEDGELKSLVINGKEQLLHIATK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide