RetrogeneDB ID:
retro_ecab_1050
Organism:
Horse ( Equus_caballus )
Location:
Un2518:1536-1980 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.63 %
Coverage:
53.74 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1050
TCACTAGAGGGACTCAATAGCAGAGTAGATACAGAAGAATGGATCAGCGAGCTGGATGAA
AGACTAGAGGAAATCACACAAGCTGAACAGATAAAAGAAAAAATTTAAAAAGAGTGAGGG
CAGTCTAAGGGACCTCTGTGACAACATCAAGCATACTAATACCTGTGTTATAGGTGTCCC
AGGAGGAGAAGAGAGAGACAAAGGTGCAGAGAATCTATTTGAAGAAATCATAGCTGAAAA
CTTTCCTAACCTAAGGAAGGAAACAGACATCCAAGTACAGGAAGCACAGAGAGCACCAAA
TAAGAGAAACCCAAGGAGGCCCACACCAAGACACATTATAATTGAAAGGTCAAGAATTAA
AGATGAGAGAGAATCCTAAAAGCCACAAGAGAAGGGCAACAAGTACATACAGAGAAACCC
ATAATGCTATCTGCTGACTTCTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQR
SLEGLNSRVD.TEEWI..LDE.LEEI.Q..N..K.K...K.......L.DNIKH.N...I.VPGGEER.KG.ENLFEEII.ENFPNLRKETDIQVQE.QR
Retrocopy
SLEGLNSRVD-TEEWISELDERLEEITQ\LNR*KKK-FKKSEGSLRDLCDNIKHTNTCVIGVPGGEERDKGAENLFEEIIAENFPNLRKETDIQVQEAQR


Parental protein
APNKSSPKRPTPIHIIIKMSKIKDK-ERILKAARERPEVTYKGKPIRLSADFS
APNK..P.RPTP.HIII..S.IKD..ERILKA.RE...V....KPI.LSADFS
Retrocopy
APNKRNPRRPTPRHIIIERSRIKDE/ERILKATREGQQV-HTEKPIMLSADFS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide