RetrogeneDB ID:
retro_ecab_1051
Organism:
Horse ( Equus_caballus )
Location:
Un2663:5945-6138 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.62 %
Coverage:
74.42 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
COX6B1
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) [Source:HGNC Symbol;Acc:2280]

Genomic region (view in browser)





>retro_ecab_1051
AACCAGAACCAGCCCAGGATCTGCTGGCAATTCTACCTGTACTTCCACCACTGTGAGAAG
GCGCTGACCACTAAAAGGGGTGATGTCGCCGACATGCAAATGGTACTGGCATGTACACCA
GTCCCTCTATCCCGCATCCTGAGTGACAGCCTGGGATGCCCACAGGGCAGAAGGTGCATT
TCCTGGGAAGATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NQNQTRNCWQNYLDFHRCEKAMTAKGGDVS-VCEWYRRVYKSLCPLSWVSAWDDRRAEGTFPGKI
NQNQ.R.CWQ.YL.FH.CEKA.T.K.GDV...C.WY..V..SL.P.S.V.AWD..RAEG.FPGKI
Retrocopy
NQNQPRICWQFYLYFHHCEKALTTKRGDVA\TCKWYWHVHQSLYPAS*VTAWDAHRAEGAFPGKI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide