RetrogeneDB ID:
retro_ecab_1052
Organism:
Horse ( Equus_caballus )
Location:
X:18542723-18544907 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
63.52 %
Coverage:
93.07 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
SUPT20H
Parental gene aliases:
No gene alias available
Parental gene description:
suppressor of Ty 20 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20596]
Genomic region (view in browser)
>retro_ecab_1052
ATGCAACACGCCTTAGAACGAGCTCTGGATCGCGCGGCGTGTGTCATCGAAAGTGCCCAA
CAGAGACCTCCTAAAAGGAAGTACGCGTCTAGAGGGGAAAAATCGGTCTATGAGAAACTG
TATGACATATATGTTGAAGAATGCGACAGAGAGCCTGAGGTTGCGGAGGAATTACGAAGC
AACGTGAACTTGCTAGAGAAGCTTGTTCAGAGAGAGTCGTTGTCGCGTTTAGTGGTCAAT
CTGCACCCAGGAGGGCAGGGATACTCGCTGATGCTCAGGGGAGAAAATGGCTCGTATTCG
GAGACCATTCGGCTGTCTTATGAAGAGGGGGAACTGCTCCAGTACTTGGATGCAGAAGAA
TTACCTCCTGTTTTGGTGGGTCTCCTGGAAAAATCTCAGGTGAACGTTTTTCACTGTGGA
TGCGTCATCGCAGAAATACGGGACTACAGGCAGTCCAGTGACGTGGAGGCCCCTGGTTAC
CAGAGCAGGTGCATTCTCTTACGACCAACCATGCAGACGTTAGCCTGCGACGTAGAGTCC
CTAACCAGCGACAGCCAGACATGGACCCAGGAGGACAAACTGTTGCTCGAGAGCCAGCTG
ATCTTAGCCACAGCTGAACCACTGTGTCTTGATCCTTCTGTGTCAGTAGCCTGCACTGCA
AACAGTCTGCTTTATAACAAACAAAAGATGAACACTGACCCAATGAAGCGCTGCTTCAAG
AGGTGCTCGAGCCCGGCTCTGAGTCGGCAGCAGGAGCTGTCTCATGGCCCACCTCCGCCC
GAGCTAACGGTACTGACTTCTTGCCAACCAAGCAAAGAGAGTAACGCAGGTGAGCAGTAT
GACCTCAAAATTTCTGGAGCAGGGAATTATGTGGATGTGTGGGAACAGAGACCCTGTGAC
TTGGCCGTACCTTCTGAAGTGGATGTGGAGAAATATGCTACAGGGAAGAAGTCCGTGAGC
TCTGATGACTCCCAGCCAACAGGCTGGCCAGCCCATGAAGTCAGAGATGATTCTGTATTT
GAATGGGAAGCAGGCGATCAGTACCGGGATACAAAGATGTTCTTCATGCGCTCGCTTAAT
GATCCACTTATCTCTGGGAAAGAAATGTCACCTAAAAAAGCCAGATATGAGAGACAGCTG
TCTCCCCCCCACCCCTCCAGAGGTGACCATTCAAAGAGTTTCATGCCTGGGTCGAAGACT
GATGCTGGGACGGTAGTCATTCGGCCCGAGGAATTGGTCCAGAAGAACAGCAGTTGTCCA
GTCAAGGTGTCACACAGCTCCAGTGGCTCAGCCAGTCTCAGCCCACTTTCTCCAGGGAAG
GAAACAGAACGGCCTAAGACCGTGCTGCTTCAGGCCTCAGTCCTGGGGGAGGAAGTCCAA
CCTCCACCGCCGCCCGTCACGCTGCCCTCGAGCTCAGGCACGAGTTCCTCAGCCAGCAGT
TTTCCTCCACAGCAGGCAGGCGGCTTTCCTAAGTCTGCATCTCCTGCTCCTGCTTCTAAG
CCACCAAGTCTTCCCCAGAACTCCCCTGTGGAAGTGAGTCGAGTTAGCACGCTTCCTGCA
GCCGCCCAGTCCACTGCTGGCTCATCACAAACACAGGTGATCACCCAGGTCAGGGTCAGC
CCCGTTGGTGTCAGGGTCATCAAAGTGGTGAATTCTGTTCCCGGAACCCACGCTTTGGTG
AGAGCTCCCAACCCCTCGCAGGGCTCTGCCACTGGGGCCACAGCTCCCACGGGAATCTTG
CCCAGCAACCTGCCCTTAAGAGGCCAGCCACCAAAAGCGCCACCCACTGCCCTGCAAGCG
AATTCTCAAGTAGGTGTTCGAGTGATTTTAAAAGATGCTCCAGGTGCCAGGCCCTTAACT
CTGCTCCAGTTTCCACCAGGTTCGCTCATTGTGAACACCCAGCAGCTGCCTGGGCAGCTG
CAGCAGCAGCACCTCTATCAGCTGATTCCAGAGCTACAGGGTCAGCAGCCCTCCACTTCG
CATCCTCAGCAGCTAGTGTCACAGGGTGCAAGTGCACAAGGTTCAGCCAGTCAGAAAACG
GCCTTCTGTGCCCAGCAAGCTGTTGTTGTTAACGTCAGTAGAAGTTTTCTGCAGCCCCAG
GTGATTGTGTTGTCTCCGCCTGTCCCTGCCCCGCAAAGACCTGGGCAAAGCCTTCCTCTG
CAGAGAGTCCAGCTCTCCTCCGCC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.18 |
Parental protein coverage
Changes in the retrocopy sequence
