RetrogeneDB ID:
retro_ecab_1053
Organism:
Horse ( Equus_caballus )
Location:
X:19204783-19205595 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.82 %
Coverage:
98.91 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1053
AACAAAACAGAGATAAATGATCTACCTGGCAAAGAGTACAAAGTAATAGTCATAAGGATG
CTCACTGATCTTGGGACAAGAATGGATGAACTCAGTGAGAACTTCAACAAAGAATTGGAA
AATATAAAAAAGACCCAATCAGAAATGAAGAATACTGGAAATGAAAAATTTACTAGAGCT
ACTCAATAGCAGAGTAGATGATACAGAAGAACAGATCAGTGAGCTGGATGAAAGACTAGA
GGGAGTCTTCCAAGCTGAACAGATAAAGGAAAAAAAGAATTAAAAAGAACGATGACAGTC
TAAGGGACCTCTGGTACAACATCAAGCACACTAACATCCATATTATAGGTGTCCCAGAAG
GAGAAGAGAGAGACAAAGGAGCAGAGAATCTATTTGAAGAAATAATAGCTGAAAATTTTC
CTAACCTGAAGAAGGAAACAGACATCCAGGTACAGGAAGTACAGAGAGCACCAAACAAGA
TGAACCCAAAGAGGCCCACTCCAAGACACATTATAAGTAAAATGTCAAGAATTAAAGGGA
GAGAATCCTACAAACTGCAAGAGAAAGGCAGCAAGTGACATGGAAAGGAACCTCTATAAG
GCTATCAGCTGACTTTTCAGCAGAAACTTTACATGCTAGAAGCGAGTGGCACAATATATT
TAAAGTGCTAAAAGGAAAAAACCTGCAGCCAAGAATACTCTACCCAGCAAGGTTATCATT
CAGAATTGAAGGAGAGATAAAGAGTTTCCCAGACAAGCAAAAACTAAAGGAGTTTATCAC
CAAGAAAACTAGTTTTAAAAGAAATGCTAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NEKEINNVTDEEYKLTVIRVLTNLGRRMDELSENFKKELENKKRT-NQKKTTILEIKNSLEGLNGRVDDTEEWISELDERLEEITQASQIKE-TRIIKNT
N..EIN.....EYK..VIR.LT.LG.RMDELSENF.KELEN.K.T.NQ.K..ILE.KN.LE.LN.RVDDTEE.ISELDERLE...QA.QIKE..RI.KN.
Retrocopy
NKTEINDLPGKEYKVIVIRMLTDLGTRMDELSENFNKELENIKKT\NQ-K*RILEMKNLLELLNSRVDDTEEQISELDERLEGVFQAEQIKE\KRIKKND


Parental protein
NMVKELWDNIKHNNIRLVGVPEGAERDKGAENLFEEVIAENFPNLRKETDWKTKKANRSPNFTNVKRPTPRHIVVKLAKVNDKEK-ILRAARQNKITYKG
.....LW.NIKH.NI...GVPEG.ERDKGAENLFEE.IAENFPNL.KETD.......R.PN..N.KRPTPRHI..K.......E.....A......T.KG
Retrocopy
DSLRDLWYNIKHTNIHIIGVPEGEERDKGAENLFEEIIAENFPNLKKETDIQVQEVQRAPNKMNPKRPTPRHIISKMSRIKGRES/LQTARERQQVTWKG


Parental protein
TSIRLSENFSADTLQARREWNDIFRTLKDKNLQPRILYAVKISFKYDGEIKTFQDKQKLREFIATRPP-LQEMLR
TSIRLS..FSA.TL.AR.EW..IF..LK.KNLQPRILY....SF...GEIK.F.DKQKL.EFI......L.EML.
Retrocopy
TSIRLSADFSAETLHARSEWHNIFKVLKGKNLQPRILYPARLSFRIEGEIKSFPDKQKLKEFITKKTS\LKEMLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide