RetrogeneDB ID:
retro_ecab_1054
Organism:
Horse ( Equus_caballus )
Location:
X:19373324-19374075 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
77.56 %
Coverage:
50.7 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1054
GAGGTTGGCCACTTAATCCAGGTTGCTGCGGGGAGAAGTAATCTCAAGAGAGTGACCCTG
GAACTGGGGAGAAAGAACCCCAACATTATCATGTCAGATGCTGATGTGGACTGGGCCTGG
AGCCCACTTTGCCCTGTTCTTCAACCAGGGCCAGTGCTACTGTGTGGGCTCGCAGACCTT
TGTGCAGGAGGGTGTTTATGCCATGTGCATGGAGCTGGGCATCACCCCTGCCAGTTCTCA
TGTAGTTGGGAACTCCTTTGACAGCTAGACCAAGCAAGGGCCACAGATGGATGAAACTCA
GTTTAAGAACGTCCTTGACTGTACTGAATCTTGGAAAGAGGAGGGGACAAAGCTGCTGTG
TGGTGGAGGGGCGGCTGCTGACCGTGGCTACTTCATCCAGCCCACTGTGTTAGGAGATGT
GCAAGATGACATGACCATCACAAAGGAGATCTTTGGGCTAGTGATGCAGATCCTGAAGTT
CAAGACCATAAAAGAAGTTGTTGAGAGAGCCAACAATTCCAAGCACAGGCTGGCTGCAGC
TGTCTTCACAAAAGACTTGGACAAGGCCAATTCTCTGTCCCAAGCCCTCCAGGCTGGCAC
TTTGTGGGTCAACTGCTATGATGTATCTGGGGCCCGGCCACCGTTTGGTGGCTACAAGAT
GTCTGGGAATGGTGGGGACCCGGGAGAGTATGGTCTGCAGGCATATACTGAAATGAAAAC
CGTTACAGTCAAAGTTCCTCAGAAGAACTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVGHLIQVAAGRSNLKKVTLELGGKSPNIIMSDADMD-WAVEQAHFALFFNQGQCCCAGSRTFVQEDVYAEFVERSVARARSRVVGNPFDSQTEQGPQVD
EVGHLIQVAAGRSNLK.VTLELG.K.PNIIMS..D.D.W....AHFALFFNQGQC.C.GS.TFVQE.VYA...E.....A.S.VVGN.FDS.T.QGPQ.D
Retrocopy
EVGHLIQVAAGRSNLKRVTLELGRKNPNIIMS--DAD\WTGPGAHFALFFNQGQCYCVGSQTFVQEGVYAMCMELGITPASSHVVGNSFDS*TKQGPQMD


Parental protein
ETQFNKVLGYIKSGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQAL
ETQF..VL....S.KEEG.KLLCGGGAAADRGYFIQPTV.GDVQD.MTI.KE.IFG.VMQILKFKTI.EVV.RANNSK..LAAAVFTKDLDKAN.LSQAL
Retrocopy
ETQFKNVLDCTESWKEEGTKLLCGGGAAADRGYFIQPTVLGDVQDDMTITKE-IFGLVMQILKFKTIKEVVERANNSKHRLAAAVFTKDLDKANSLSQAL


Parental protein
QAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQAYTEVKTVTIKVPQKNS
QAGT.W.NCYDV.GA..PFGGYKMSGNG...GEYGLQAYTE.KTVT.KVPQKNS
Retrocopy
QAGTLWVNCYDVSGARPPFGGYKMSGNGGDPGEYGLQAYTEMKTVTVKVPQKNS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide