RetrogeneDB ID:
retro_ecab_1056
Organism:
Horse ( Equus_caballus )
Location:
X:26558806-26559987 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
55.85 %
Coverage:
100.0 %
Frameshifts:
7
Stop codons:
5
Parental gene:
Parental gene symbol:
LAMP1
Parental gene aliases:
No gene alias available
Parental gene description:
lysosomal-associated membrane protein 1 [Source:HGNC Symbol;Acc:6499]
Genomic region (view in browser)
>retro_ecab_1056
TTGCTCCTGCTGCTGCTTGCAGGACTGATGCATAGTAAATCTGCAGTGTTTATGGAGAAA
AGTGGCTACTGATCAGCTTGCCCAATGGACAACTTCTCAAGCTGCCTTCTTGAGGAACTA
TCATACAAAAGTGGTGCTAAAAATGTGACCTTGAATCCACCATCAAATGCAGAAATACTG
AGTAGTAGCTGTGGTGGCAAAGAGAATGCTTCTGATGCCAATACAGTGATTGCTTTTGAA
GAAAAATATACGTTGACCCTCAATTTCATAAGAAATACAGCATCATACAGTATCCAACTG
TTAGGTTTTGCTTATAACTTGTCAGACATAACTATTTCTCTCAATGCAAGGGCAAAAGGA
AACAAGATTATGGAATCCATACCTGACATCAAGTACACATAGATAAAAAATACACACGTG
TCAGAGACAACCAGATACACATGAATAATGTAACTATTAAACTATATGAAGTAACTATCC
AGGAATATCTTTCAAATAACTTCAACAAGGAAGAAATAGTGTGTAAGCAAGAAGAGCCTT
TCTCAACGACACCTCCAAGGTCAAAGCCCACCACTTCCCCAGAAATGTCCATCTGCTTAG
AAGCACAATATGCGTGGCACAAATGCAACTGGTCTGCTTGTAGCATGGGCTGATGACTGA
TCACCACTTACGAGAAAAGCTCTAAGGTGACTGTGACAAGAGCATTCAATATCAATCCAA
ATAAGACAGTGAGCTATAATTCTCATTTAGTATCACTAGAACTCTGCAGTGAAAATGTCA
CTCTTATCTTCAGTTTTGAAATGAATGCAAATTCTAGCCTGCTTTCCTACAGGGAATCCA
GTTAAATACAACTTTACATGACAGCAGAGATCCCACTATTAAAGCTTCTAATGAATCACT
GAGAGCCTTTCAAGCCACCACTGGAAATTCTCATAAGCGTAATCCTGAGGAAAACGTTCA
AGTCACAAATACGTCTTCAGTCAACATATTCAAAGTTTGGATGGGTCCAGGCTTTCAAGT
TCGAAAGTGACAAGTTTGGATCTGTGGAAGAATGTCAATCAGATGAAAATAACATGCTGA
GTTCTGTTGCCATTGGTGGTGCTCTTTCAGGAATTGTCCTCATTGTCTAAATTGCTTATC
TCGTTGCCAGGAACAGAAGTCATGCCGGGAATCAGAAAATT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
