RetrogeneDB ID:
retro_ecab_1062
Organism:
Horse ( Equus_caballus )
Location:
X:42210229-42210811 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.38 %
Coverage:
96.98 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1062
ATCAAAGATAGACATGTTGAAATCCTCCAGATAGAGGAAGAGAGAGAACTAAGACTAAAA
AGAAATGAAGAAAGTCGCCAAGAAATATCAGACTCAATTAGGAAATGCAACATAAGAATT
ATAGATATTCAAGAGGGAGAAGAGAAGAAGAATGCAACAGAAAGCTTCTTCAAAGAAATA
ATAGCAGAAAACTTTGCAAACCTAGGGAAGAGGCTAGGGAAATAAATTTGGAAGAAGCTA
TCAGAATTGCTAAATATGTCAGTGTAAAAAGACCTACTGCAGGGCATATATTAGTGAAAC
TGGAGAAAAATGAATGACAAAGAAAAAATACTAAGGGCAGCAAGATAGAATAAAATAACC
TAGAGAGGAACCCCTATCAGGCTTTCAGTGGATTTCTCTTCAGGAACTTTACAGGCTAGA
AGAGACTGGAATAACATACTCAATTCTTTGAAGAACAAAAACTTTCCACCAAGAATACTC
TATCCAGTGAAAATATCCTTCAGATATGATGGAGAAATAGAAACTTTCCCAGAAAGACAT
AAGCTAGGGGAGTTCATAGCCATGAGACACCCCCTATGAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNL-GKG-LEIQVKEANRTPNYINVERPSPRHILV
..DR..E.L..EEERELRLKR.E...QEI...IRK.NIRII.I..GEE..N..ES.FKEII.ENF.NL.G.G..EI...EA.R...Y..V.RP...HILV
Retrocopy
IKDRHVEILQIEEERELRLKRNEESRQEISDSIRKCNIRIIDIQEGEEKKNATESFFKEIIAENFANL\GRG\REINLEEAIRIAKYVSVKRPTAGHILV


Parental protein
KLAK-LVMKEYIMAEAARQKKITYKGSPIRLSADFSQ-TVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQE
KL.K....KE.I...AAR..KIT..G.PIRLS.DFS..T.Q.RR.WN.I...LK.KN.PPRILYPVK.SFRY..EI..F....KL.EFI..R.PL.E
Retrocopy
KLEK\MNDKEKIL-RAAR*NKIT*RGTPIRLSVDFSSGTLQARRDWNNILNSLKNKNFPPRILYPVKISFRYDGEIETFPERHKLGEFIAMRHPL*E


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide