RetrogeneDB ID:
retro_ecab_1066
Organism:
Horse ( Equus_caballus )
Location:
X:45349030-45349270 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.75 %
Coverage:
52.98 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS13
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Genomic region (view in browser)





>retro_ecab_1066
ATAGGTCACATGTATGTTCCTGGGAAGGACTTGTCCCAGTAGGCTCTGCCCCTCTGCCAC
AGCACCCCCACCTGGCTGAAGATGATGTCTGATGACACAAAAGAGCAGATCTACAAACTG
GCCAATAAAGGCCTGACTCCCTCACAAATTGATGTGGTCCTGAGAAACTCACATGGCACT
GCACAAGTATGTTTTGTGAGAGGCAATAAAATCTTGAGAATTCTTAAGTACAAAGGACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL
.G.M..PGK.LSQ.ALP...S.PTWLK..SDD.KEQIYKLA.KGLTPSQI.V.LR.SHG.AQV.FV.GNKILRILK.KGL
Retrocopy
IGHMYVPGKDLSQ*ALPLCHSTPTWLKMMSDDTKEQIYKLANKGLTPSQIDVVLRNSHGTAQVCFVRGNKILRILKYKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide