RetrogeneDB ID:
retro_ecab_1067
Organism:
Horse ( Equus_caballus )
Location:
X:48844738-48845358 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
96.63 %
Coverage:
62.16 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]
Genomic region (view in browser)
>retro_ecab_1067
CCCCTGTTTGTGATGGGCGTGAACCATGAGAAGTATGACAATTCCCTGAAGATTGTCAGC
AATGCCTCCTGCACCACCAATTGCTTGGCCCCCCGGCCAAGGTCATCCATGACCACTTTG
GCATCGTGGAGGGACTCATGACCACAGTGCATGCCATCACTGCCACCCAGAGGACTGTGG
ATGGCCCCTCTGGGAAGCTGTGGCGCGATGGCCGAGGGGCTGCCCAGAACATCATCCCTG
CTTCTACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTGAACGGGAAGCTCA
CTGGCATGGCCTTCCATGTCCCCACCCCTAACATGTCAGTCGTGGATCTGACCTGCCGCC
TGGAGAAAGCTGCCAAATATGATGAGATCAAGAAGGTGGTGAAGCAGGCATCGGAGGGCC
CCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGTCTCCTGCGATTTTAACAGTG
ACACCCACTCTTCCACCTTCGATGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCA
AGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAATAGGGTGGTGGACCTTATGG
CCCACATGGCCTCCAAGGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 0.31 |
| SRP021940_placental_villous | 0.27 |
| SRP021940_synovial_membrane | 0.21 |
| SRP021940_testis | 0.12 |
Parental protein coverage
Changes in the retrocopy sequence
