RetrogeneDB ID:
retro_ecab_1068
Organism:
Horse ( Equus_caballus )
Location:
X:50217356-50217685 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
57.66 %
Coverage:
60.45 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1068
GAAAGCACTGAAAACAGAGGTGACCATATGGAGGAGAGAATTAGTTAACTTGAAGATAGA
AATGGAGAAATGATTCGGGTGGAAGAGGAGAGAGAACTAAGATTTTTTTTAAAAAAAATG
AAGAAATTCTATGAGAAATATCTGACTTAATTACAAAAAGCATCATAAGGATAATAGGTA
TCCCAAAAGGAGAAGAGAAGGAGAAAGGAATGGAGTGCTTATACTAAGAAACAATAGCTG
AGAACTTTCCAAACCTGGAGTGAAAACTGGATATACAAGTACATGAAGCCAATAGAACTC
CTAATTATCTCAAAGCAAAAAGACCTTCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ESINNRMDQAEETCE-LEDRTFEI--IQSEENKEKRMKKIK-DSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANR
ES..NR.D..EE....LEDR..E......E.......KK.K...L.E....I.KS.IRIIGIP.GEEK.K..E.L..E.IAENFPNL..KLD.QVHEANR
Retrocopy
ESTENRGDHMEERIS*LEDRNGEMIRVEEERELRXXXKKMK/EIL*EISDLITKSIIRIIGIPKGEEKEKGMECLY*ETIAENFPNLE*KLDIQVHEANR


Parental protein
TPNYIKAKRPS
TPNY.KAKRPS
Retrocopy
TPNYLKAKRPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide