RetrogeneDB ID:
retro_ecab_1069
Organism:
Horse ( Equus_caballus )
Location:
X:53339629-53340283 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.65 %
Coverage:
98.65 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
PLEKHB2
Parental gene aliases:
No gene alias available
Parental gene description:
pleckstrin homology domain containing, family B (evectins) member 2 [Source:HGNC Symbol;Acc:19236]

Genomic region (view in browser)





>retro_ecab_1069
GTGAAGAGTGGGTGGTTGCTGCGACAGAGCAGTATTTGGAAGCGCTGGAAGAAATAGTTT
GGCCTGTGGTCAGATGGTCACCTGATCTATTAGGATGACCAAACTCGGCAGAGTGTCGAG
GATAAGGTCCACATGCTGGTGGACTGCATCAATATCTGCACAGGGCGTGAATGCCAGGAT
GTGCAGCCTCCAGATGGGAAGCCGAAAGACTGTATGCTGCAGATTCTTCGCCGAGATGGG
CGAACTATCAGTCTTTGTTCAGAAAGCACAGAAGATTGTTTGGCCCAGAAATTTATGCTT
CAGGATTCCAGGATAAATACGGCTTATGTTGGCTTAGAAGTCAGGTATGATGAGATGGCT
GTCGCTTCTTCCCCACCTCCTTACACAGCCTATGCTGCACCGACCCCTGAGCAGACATAT
GGCTATGGTCCATACGGTGGTGCATAGCCGCCAGGAACTCAAGTTGTCCATGCTGCGAAT
AGGCAGGCTTATGCTGCACCCTACCAGTACCCACATGCAGGACTTTATGGACACCAGCCT
GCCAACCAGGTCATCATTTGTGAGCGATATGGAGACAATGACAGTGATCTGACACTGGGC
ATGCTGGCTGGAGCAGCCACAGGCATGGCCTTAGGGTCTCTGTTCTGGGTCTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSVEDKVHMPVDCINIRMGHECRDVQPPDGKPKDCMLQIVCRDGKTISLCAESTDDCLAWKFT
VKSGWLLRQS.I.KRWKK..F.LWSDGHLIY.DDQTRQSVEDKVHM.VDCINI..G.EC.DVQPPDGKPKDCMLQI..RDG.TISLC.EST.DCLA.KF.
Retrocopy
VKSGWLLRQSSIWKRWKK*-FGLWSDGHLIY*DDQTRQSVEDKVHMLVDCINICTGRECQDVQPPDGKPKDCMLQILRRDGRTISLCSESTEDCLAQKFM


Parental protein
LQDSRTNTAYVGSEVMYDETAVAASPPPYTAYATPTPEQAYGYGPYSGVYPPGTQVVYTANGQAYAVPYQYPCAGLYGQQPANQVIIRERYRDNDTDLAL
LQDSR.NTAYVG.EV.YDE.AVA.SPPPYTAYA.PTPEQ.YGYGPY.G..PPGTQVV..AN.QAYA.PYQYP.AGLYG.QPANQVII.ERY.DND.DL.L
Retrocopy
LQDSRINTAYVGLEVRYDEMAVASSPPPYTAYAAPTPEQTYGYGPYGGA*PPGTQVVHAANRQAYAAPYQYPHAGLYGHQPANQVIICERYGDNDSDLTL


Parental protein
GMLAGAATGMALGSLFWVF
GMLAGAATGMALGSLFWVF
Retrocopy
GMLAGAATGMALGSLFWVF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide