RetrogeneDB ID:
retro_ecab_1070
Organism:
Horse ( Equus_caballus )
Location:
X:53507731-53508247 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.88 %
Coverage:
63.84 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
IGFBP5
Parental gene aliases:
No gene alias available
Parental gene description:
insulin-like growth factor binding protein 5 [Source:HGNC Symbol;Acc:5474]

Genomic region (view in browser)





>retro_ecab_1070
TGCTTCAATGAAAAGAGCCACCATGAGCAAGCCAAGATGGAGAGAGACTCCCATGAGCAC
GAGAAGCCAACCACCTCTGAGATGGTGGAGACCTACTCCCCTAAGATCTTCTGGCCCAAG
CACATCTGCACCTCTGAGCTGAAGGCCCAGGTAGTGAAGAAGGTCCGCAGAAAGAAGTTG
ACCCAGTCCAAGTTTGTGGGGGAAGCTGAGAACACTGCCCACCCCCGAGTCATCAGTACG
CCTGACAGGAGACAGGAATCTGAGCAGGACCCCTGAGGCAGACACGTGGAGGCTTCCCTG
CAGGAGCTCAATGCCAGCACACGCATGGTGCCGGGAGCTGTGTACCCACCACACTGTGAC
CACAAAGGGTTCTACGAGAGAAAACAGTGCAAGCCTTCCCATGGCCACAAACGTGGCATC
TGCTGGTTCATGGACAAGTACAGAATGAAGCTGCCAGGCATGGAGTATGTCGCCGGGGAT
TTTCAGTGCCACACCTTTGACAGCGGCAACATTGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CLNEKSYREQAKIDRDSREHEEPTTSEMAEETYSPKVFRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEAS
C.NEKS..EQAK..RDS.EHE.PTTSEM.E.TYSPK.F.PKH...SELKA..VKK.RRKKLTQSKFVG.AENTAHPRVIS.P..RQESEQ.P..RH.EAS
Retrocopy
CFNEKSHHEQAKMERDSHEHEKPTTSEMVE-TYSPKIFWPKHICTSELKAQVVKKVRRKKLTQSKFVGEAENTAHPRVISTPDRRQESEQDP*GRHVEAS


Parental protein
LQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQCHTFDSSNVE
LQEL.AS.RMVP.AVY.P.CD.KGFY.RKQCKPS.G.KRGICW..DKY.MKLPGMEYV.GDFQCHTFDS.N.E
Retrocopy
LQELNASTRMVPGAVYPPHCDHKGFYERKQCKPSHGHKRGICWFMDKYRMKLPGMEYVAGDFQCHTFDSGNIE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide