RetrogeneDB ID:
retro_ecab_1071
Organism:
Horse ( Equus_caballus )
Location:
X:54469859-54470731 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.54 %
Coverage:
99.31 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1071
AGGCAAAGGAATACATTCCAAGCAAGGGAACAGGACAAAACCCCAGAGAAAGAACTAAAT
GAAACAGAAATAAATAATATACTTGAAAAAGAGTTCAAAACAATGTCATAAGGATGCTCC
TGATCTGAGAAGACTGTATGAACACAGTGAGAATGTCAAGGAAGAGTTGGAAAATATAAA
AAAGAATCAATCAGAAATAAAGAATACAATACTGGAAATGAAAACATGACTAGAGGGACT
CAACACTGAGTAGATGATACAGAAGAACAGTTCAGTGGGGTGGACAAAAGACTAGAGGAA
ATCACCAAAGCTGAACAGATAAAAGAAAGAAAAAGAATGAGAACAGTCTAAGGGAACTCT
GGGATGATATCAAGCACACGAACATTCATATTATAGGTGTCCCAGAAGGAGAAGAGAGAG
AGAAAGGGGCAGAGAATCTGTTTAAAGAAACAATAGTTGAAAACTTTCCTAACTTAAGGA
ATGAAAGAGACATCCAAGTACAGGAAGCACAGAGAGCATCAAATAAGATTAAGCCAAAGA
GGCCCACATCAAGACATCTTATAATTAAAATGTCCAAAATTAAAGACAAAGCAAGAATCC
TGAAAGCTGGAGGAGAAAGACAACAAGTGACATACAAAGGAAATCCCATAAGGCTATCAG
CTGACTTCTCAGTTGAAATACTACAGGCTAGAAGAGAGCGGCACAATATATTTACACTAT
TGAAAGGAAAAACCCTACAGCCAAGAATACTCTACCTGGTAAGGCTATCACTCAGAATGG
AAGGGGAGATAAAGAGTTTCCCAGGCAAGCAAAATTTAAAGGAGTTTACCAGCAAGAAAC
CAGTTCTACAAGAAATGCTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFK-QKVKLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSR-VDDTEERISKLDER
RQR.TFQ..EQDKTPEKELNETEI.N...K.FK.Q..K...DL.RR..EHSEN...ELENIKK.QSE.KNTI.EMK..LEGLN...VDDTEE..S..D.R
Retrocopy
RQRNTFQAREQDKTPEKELNETEINNILEKEFK\QCHKDAPDL-RRLYEHSENVKEELENIKKNQSEIKNTILEMKT*LEGLNTE/VDDTEEQFSGVDKR


Parental protein
LEEVTQAEQIKE-KMKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGR
LEE.T.AEQIKE.K.K...SLR.LWD.IK.T.I.I.GVPE.EE..KGAE......I.ENFP.L..E.D.QVQEAQ.A.N.I.PKR.T.RH.I.K.S....
Retrocopy
LEEITKAEQIKE/KKKNENSLRELWDDIKHTNIHIIGVPEGEEREKGAENLFKETIVENFPNLRNERDIQVQEAQRASNKIKPKRPTSRHLIIKMSKI-K


Parental protein
NKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
.K.RILKA..ERQQVTYKGN.IRLSAD.S.E.LQARR..H.IF..L..K...PRILYL.R.S..MEGEIK.FP.KQ.LKEF..KKP.LQEMLKGLI
Retrocopy
DKARILKAGGERQQVTYKGNPIRLSADFSVEILQARRERHNIFTLLKGKTLQPRILYLVRLSLRMEGEIKSFPGKQNLKEFTSKKPVLQEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide