RetrogeneDB ID:
retro_ecab_1072
Organism:
Horse ( Equus_caballus )
Location:
X:55514089-55514599 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.06 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CNBP
Parental gene aliases:
No gene alias available
Parental gene description:
CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164]

Genomic region (view in browser)





>retro_ecab_1072
ATGAGCAGTAAGGACTGCTTCAGGGGTGGACGCTCTGGCCACTGGGCCCGGGGATGCCCT
AGAGGAGGAGCTCGAGGGCGCGGAGCTAGAGGCCGTGGCAGAGGTTCTCAGGGCACTTCC
ACCACCCTACCTGACATCTGTTACCGCTGCGGTGAGTCTGGTCATCATGCTAGGGACTGT
CACCTTCTCGAGAACATCTGCTACAACTGTGGGAGAAGTGGCCACATTGCCAAAGACTGT
ACGGAGCCTAAGCGAGAGAGGGAGCAGTGCTGTTACACTTGTGGCAGACGAGGCCATCTG
GCTCGCGATTGTGACCGTCAGGAACAGCAAAAGTGTTACTCTTGCGGCGAATTAGGCCAC
TTTCAGAAAGACTGTACCCAAGTCAAGTGCTACCGGTGTGGCGAGACCGGCCACGTGGCC
ATCAACTGTAGCAAGAAGAACAAGGTCAATTGCTACCGCTGTGGCAAGCCCGGACATCTA
GCCCGGGAATGCCCCACTGAGGCTACCGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 8.9

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL
MSS..CF..GRSGHWAR.CP.GG.RGRG.R.RGRG.Q..S..LPDICYRCGESGH.A.DC.L.E..CYNCGR.GHIAKDC.EPKREREQCCY.CG..GHL
Retrocopy
MSSKDCFRGGRSGHWARGCPRGGARGRGARGRGRGSQGTSTTLPDICYRCGESGHHARDCHLLENICYNCGRSGHIAKDCTEPKREREQCCYTCGRRGHL


Parental protein
ARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
ARDCD....QKCYSCGE.GH.QKDCT.VKCYRCGETGHVAINCSK...VNCYRCG..GHLAREC..EATA
Retrocopy
ARDCDRQEQQKCYSCGELGHFQKDCTQVKCYRCGETGHVAINCSKKNKVNCYRCGKPGHLARECPTEATA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide