RetrogeneDB ID:
retro_ecab_1073
Organism:
Horse ( Equus_caballus )
Location:
X:55857391-55858232 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.35 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1073
ATGAGGAGACAAAGGAATATGTTCAAAATAAAAGAACAGGATAAATCATCAGAAAAAGAA
CTAAACAAAACAGGGATAAACAATCTACCTGATAAAGAGTACAAACTAATGGTTATAAGG
ATGCTCACTGAACTTGGGAAAATAGATGAACACAGTGAGAACTTCTACAAAAAATTAGAA
AATATAAAAAAGAGTCAATCAGAGCTGAAGAATACAATCATTAAAATGAAAAATTCAGTA
GGAGGAATCAACAGCAGAGTAGATGACATAGAAGAATAGATCAACGATCTGGATGACAGA
GTAGAGGAAATCACCCAAGGTGAACAGAAAAAAGAAAAAAGAAAAAAAAGAGAATGAGGA
CAGTTTAAGAGACCTCTGGGACAACATCATGCATACTAAAATCCACATTGTAGGTGTCCT
AGAAGGAGGAGAGAGAGACAAAGGGGCAGAGAACATATTTGAAGAAATAACAGCTGAAAA
TTTCCCTAATCTGAGGAAGGAAACAGACATCTACATACAGGAAGCACAGAGACCACCAAA
CAAGATGAACCCAAAGAGGCCCATGCCAAGATACATTATAATTAAAATGTCAAGAATTAA
ATATAAAAAGAGACTCCTAAAAGCTGTAAGAGAAAGGCAACAAGTGACATACAAAGGAAA
CTCCATAAAGATATCAGCTGATTTTTCAGCAGAAACCTTACAGGCTAGAAGGAAGTGGCA
CAATATATTCAAAATGTGGGAAGGAAAAAAGTTACAGCCAAGAATACTCTATCCAGCAAG
GTTATCATTCAGAATGGAAGGAGAGATAAAGAGTTTCCTAGACAAGCAAAAACTGCAGGA
G

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLDE
MRRQRNMF....QDK..EKELN.T...NLPDKE.K...IRML..LG...D.HSEN..........SQSE.K.TI.KMKNS..G.NSRVDD.EE.I..LD.
Retrocopy
MRRQRNMFKIKEQDKSSEKELNKTGINNLPDKEYKLMVIRMLTELG-KIDEHSENFYXXXXXXXXSQSELKNTIIKMKNSVGGINSRVDDIEE*INDLDD


Parental protein
KLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSK
..EEI.Q.VN.........N......LWDNI.H..I.I..V..G.ER.KG.EN.FEEI..ENFPNLRKETDI..QE.QR.PNK..PKRP.P..IIIKMS.
Retrocopy
RVEEITQ\VNXXXXXXXXENEDSLRDLWDNIMHTKIHIVGVLEGGERDKGAENIFEEITAENFPNLRKETDIYIQEAQRPPNKMNPKRPMPRYIIIKMSR


Parental protein
IKDKERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQNVKE
IK.K.R.LKA.RER..VTYKG..I..SADFSAETLQA.R.WH.IFK...GK.LQPRI.YP.R.SFRMEGEIK.F.DKQ...E
Retrocopy
IKYKKRLLKAVRERQQVTYKGNSIKISADFSAETLQARRKWHNIFKMWEGKKLQPRILYPARLSFRMEGEIKSFLDKQKLQE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide